Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007542 | Potato | plastid | 92.17 | 92.17 |
| CDY44312 | Canola | nucleus | 22.42 | 67.02 |
| Solyc07g007960.2.1 | Tomato | plastid | 60.85 | 64.53 |
| Bra030141.1-P | Field mustard | nucleus | 39.86 | 58.33 |
| VIT_11s0016g05730.t01 | Wine grape | plastid | 57.65 | 57.24 |
| CDX99829 | Canola | plastid | 50.53 | 56.8 |
| AT5G32440.3 | Thale cress | plastid | 53.38 | 56.6 |
| Solyc03g116780.2.1 | Tomato | plastid | 52.31 | 56.54 |
| CDX94671 | Canola | plastid | 50.18 | 55.95 |
| Bra010829.1-P | Field mustard | plastid | 51.96 | 55.51 |
| CDY48340 | Canola | plastid | 48.4 | 55.28 |
| Bra032320.1-P | Field mustard | plastid | 48.4 | 55.28 |
| CDY35306 | Canola | plastid | 50.89 | 55.0 |
| KRH20146 | Soybean | nucleus | 50.53 | 54.2 |
| CDX90191 | Canola | plastid | 50.18 | 53.82 |
| CDY26987 | Canola | cytosol | 17.79 | 52.08 |
| Solyc12g042750.1.1 | Tomato | nucleus, plastid | 42.7 | 49.59 |
| Os09t0119100-01 | Rice | nucleus, plastid | 41.99 | 43.87 |
| TraesCS5D01G166600.1 | Wheat | nucleus | 40.93 | 41.67 |
| Os08t0313600-00 | Rice | nucleus | 40.57 | 41.3 |
| HORVU5Hr1G050690.2 | Barley | plastid | 40.21 | 41.09 |
| TraesCS5B01G159800.1 | Wheat | plastid | 40.21 | 40.94 |
| TraesCS5A01G162300.2 | Wheat | nucleus | 39.5 | 40.36 |
| Solyc06g068190.1.1 | Tomato | cytosol, nucleus, peroxisome | 19.93 | 39.16 |
Protein Annotations
| EnsemblPlants:Solyc12g009620.1.1 | EnsemblPlantsGene:Solyc12g009620.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:UBA-like_sf |
| ncoils:Coil | PANTHER:PTHR31245 | PANTHER:PTHR31245:SF1 | SUPFAM:SSF46934 | UniParc:UPI00027699AB | UniProt:K4DC50 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:2884183..2890685
Molecular Weight (calculated)
31067.4 Da
IEP (calculated)
5.074
GRAVY (calculated)
-0.476
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAILCGKRS NLFEDFQSSS SASTPVSKRI RRNFSPARSN SDSDRVLCGN LIASSALDHL LMIFSDTDKQ LVERALEESG DDLDSAIKRL NELCLGSGDN
101: LRPVAGSSGA THEFSSQVFP QGVATTNGET PSAEDLSSAE VVHLQGTEWV DLFVGEMMSA SNIDDAKARA SRALEAFEKT ICARATEAAC RFQKENMMLK
201: QQLEALVQEN AIFKRAVAIQ HERQKEFENR GNELNQLKQS VAQYQEQLRT LEVNNYALTM HLKQAQQSNN SIPGRFNPDV F
101: LRPVAGSSGA THEFSSQVFP QGVATTNGET PSAEDLSSAE VVHLQGTEWV DLFVGEMMSA SNIDDAKARA SRALEAFEKT ICARATEAAC RFQKENMMLK
201: QQLEALVQEN AIFKRAVAIQ HERQKEFENR GNELNQLKQS VAQYQEQLRT LEVNNYALTM HLKQAQQSNN SIPGRFNPDV F
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.