CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35306	Canola	plastid	92.37	93.08
Bra010829.1-P	Field mustard	plastid	90.46	90.11
CDY44312	Canola	nucleus	32.06	89.36
CDY48340	Canola	plastid	75.19	80.08
CDX99829	Canola	plastid	75.19	78.8
AT5G32440.3	Thale cress	plastid	74.43	73.58
CDX94671	Canola	plastid	69.85	72.62
CDY26987	Canola	cytosol	25.95	70.83
KRH20146	Soybean	nucleus	56.11	56.11
VIT_11s0016g05730.t01	Wine grape	plastid	59.92	55.48
Solyc07g007960.2.1	Tomato	plastid	54.2	53.58
PGSC0003DMT400079410	Potato	plastid	53.82	53.01
PGSC0003DMT400007542	Potato	plastid	55.34	51.6
Solyc12g009620.1.1	Tomato	plastid	53.82	50.18
Os09t0119100-01	Rice	nucleus, plastid	45.04	43.87
CDX67941	Canola	plastid	39.31	42.56
CDY41114	Canola	nucleus, plastid	35.5	42.08
CDY70430	Canola	plastid	37.4	40.0
Os08t0313600-00	Rice	nucleus	41.6	39.49
CDY37566	Canola	nucleus, plastid	35.88	38.21
TraesCS5D01G166600.1	Wheat	nucleus	39.69	37.68
TraesCS5B01G159800.1	Wheat	plastid	39.31	37.32
HORVU5Hr1G050690.2	Barley	plastid	38.55	36.73
TraesCS5A01G162300.2	Wheat	nucleus	38.55	36.73

Protein Annotations

EnsemblPlants:CDX90191	EnsemblPlantsGene:GSBRNA2T00150743001	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	ProteinID:CDX90191	ProteinID:CDX90191.1	SEG:seg
SUPFAM:SSF46934	UniParc:UPI0004EEE7D9	MapMan:35.2	:	:	:

Description

BnaA08g17930D

Coordinates

chrLK031862:+:575201..576465

Molecular Weight (calculated)

29342.6 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.618

Length

262 amino acids

Sequence
(BLAST)

001: MSAIVCGSKR SLFEDLSAAS SPPVSKKLRY FSSSSPPRFP PPPPASSSLL LDHLAAIFPD MDHQILERAI EECGDDIDSA IRCLNQLRLE STTNKNSESS
101: LIQEEAKVEA PQQGKEEEVL NMDGTEWVNL FVSEMMNASD MKDAKDRAGR ALEALEKSIN ARAGADAAMQ SSLQQENSML RQQLEAIVQE NGLLKRAVVM
201: QQKRQKESDD QSQELQHLRQ MVTQYQEQLR TLEVNNYALT LHLKQAQQNN SSIPGRFHPD VF

Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.