Factsheet for PGSC0003DMT400079410

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g007960.2.1	Tomato	plastid	87.59	87.92
CDY44312	Canola	nucleus	22.93	64.89
PGSC0003DMT400007542	Potato	plastid	65.04	61.57
VIT_11s0016g05730.t01	Wine grape	plastid	62.41	58.66
Bra030141.1-P	Field mustard	nucleus	42.11	58.33
CDX94671	Canola	plastid	54.51	57.54
PGSC0003DMT400073448	Potato	plastid	56.02	56.65
PGSC0003DMT400001668	Potato	plastid	54.89	56.59
KRH20146	Soybean	nucleus	55.64	56.49
CDX99829	Canola	plastid	52.63	56.0
CDY48340	Canola	plastid	50.75	54.88
Bra032320.1-P	Field mustard	plastid	50.75	54.88
Bra010829.1-P	Field mustard	plastid	53.76	54.37
AT5G32440.3	Thale cress	plastid	54.14	54.34
CDY35306	Canola	plastid	52.63	53.85
CDX90191	Canola	plastid	53.01	53.82
PGSC0003DMT400073696	Potato	nucleus	46.99	49.21
CDY26987	Canola	cytosol	17.67	48.96
Os08t0313600-00	Rice	nucleus	46.24	44.57
Os09t0119100-01	Rice	nucleus, plastid	44.74	44.24
TraesCS5B01G159800.1	Wheat	plastid	42.48	40.94
TraesCS5A01G162300.2	Wheat	nucleus	42.11	40.73
TraesCS5D01G166600.1	Wheat	nucleus	41.73	40.22
HORVU5Hr1G050690.2	Barley	plastid	41.35	40.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400079410	EnsemblPlantsGene:PGSC0003DMG400030911	EntrezGene:102585313	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PFAM:PF02845
PFscan:PS51140	PGSC:PGSC0003DMG400030911	RefSeq:XP_006358301.1	SEG:seg	SUPFAM:SSF46934	UniParc:UPI0002969F26
UniProt:M1D1T1	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030911]

Coordinates

chr7:-:4163097..4172988

Molecular Weight (calculated)

29801.3 Da

IEP (calculated)

5.430

GRAVY (calculated)

-0.559

Length

266 amino acids

Sequence
(BLAST)

001: MSAVVCGKRS NFFEDLQSSP SPPPVPKRIR CSPSSFSPPP SFSTPSVIDH LISVFPDMDK QLLERALDEC GDLDSAIKRL NELRLGSAEN LGPLPGRSDA
101: TQDNGIPILT QGNGGPTPCS SVAKELYRME RTEWVELFVR EMTSASNIDD AKSRASLALE AFEKSICARA TEAAARNFQQ EHIMLKQQVE DLLQENNILK
201: RAFAVQHERQ KEFEDRGNEV NQLKQMVAQY QEQLRTLEVN NYALTMHLKQ AQQGNSIPGR FHPDVF

Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.