CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032320.1-P	Field mustard	plastid	100.0	100.0
CDY44312	Canola	nucleus	34.15	89.36
CDX99829	Canola	plastid	80.89	79.6
CDX90191	Canola	plastid	80.08	75.19
CDY26987	Canola	cytosol	29.27	75.0
CDY35306	Canola	plastid	79.27	75.0
CDX94671	Canola	plastid	73.58	71.83
AT5G32440.3	Thale cress	plastid	74.39	69.06
KRH20146	Soybean	nucleus	57.72	54.2
VIT_11s0016g05730.t01	Wine grape	plastid	60.57	52.65
PGSC0003DMT400079410	Potato	plastid	54.88	50.75
Solyc07g007960.2.1	Tomato	plastid	54.06	50.19
PGSC0003DMT400007542	Potato	plastid	56.5	49.47
Solyc12g009620.1.1	Tomato	plastid	55.28	48.4
CDY41114	Canola	nucleus, plastid	37.4	41.63
CDX67941	Canola	plastid	40.24	40.91
CDY70430	Canola	plastid	40.65	40.82
Os09t0119100-01	Rice	nucleus, plastid	43.5	39.78
CDY37566	Canola	nucleus, plastid	39.43	39.43
Os08t0313600-00	Rice	nucleus	41.46	36.96
TraesCS5A01G162300.2	Wheat	nucleus	40.65	36.36
TraesCS5B01G159800.1	Wheat	plastid	40.65	36.23
HORVU5Hr1G050690.2	Barley	plastid	39.43	35.27
TraesCS5D01G166600.1	Wheat	nucleus	39.43	35.14

Protein Annotations

EnsemblPlants:CDY48340	EnsemblPlantsGene:GSBRNA2T00089312001	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PANTHER:PTHR31245:SF12
PFscan:PS51140	ProteinID:CDY48340	ProteinID:CDY48340.1	SEG:seg	SUPFAM:SSF46934	UniParc:UPI0002542649
UniProt:A0A078IBT1	MapMan:35.2	:	:	:	:

Description

BnaA09g26810DBnaA09g26810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBT1]

Coordinates

chrLK032766:+:112957..114151

Molecular Weight (calculated)

27715.8 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.598

Length

246 amino acids

Sequence
(BLAST)

001: MSAIVCGSKR SVFEDLSSSP PLSKKLRRFS SSSSSLLLLP HLAALFPDMD THILERAIEE CGDDIDSAIR SLNQLRLDKS SESSLIQEEA KVEGGGSSGK
101: EEVLNMDGNE WVELFVREMM NASDMKDAKD RASRALQALE KSINTRAGSD AAMQISLQQE NLMLRQQLEA IVQENSLLKR AVVTQQKRQK ETEDQSQELQ
201: RLRQMVTQYQ EQLRTLEVNN YALTLHLKQA QQNNSSIPGR YNPDVF

Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.