CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37566	Canola	nucleus, plastid	90.05	80.89
CDY70430	Canola	plastid	72.85	65.71
CDX67941	Canola	plastid	71.49	65.29
AT1G80040.1	Thale cress	nucleus, plastid	72.85	64.92
CDY44312	Canola	nucleus	19.0	44.68
PGSC0003DMT400073696	Potato	nucleus	44.8	38.98
PGSC0003DMT400073448	Potato	plastid	46.15	38.78
KRH44476	Soybean	plastid	44.8	38.08
Solyc03g116780.2.1	Tomato	plastid	44.8	38.08
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	43.89	38.04
Solyc12g042750.1.1	Tomato	nucleus, plastid	41.63	38.02
PGSC0003DMT400001668	Potato	plastid	44.34	37.98
CDY48340	Canola	plastid	41.63	37.4
KRH09716	Soybean	nucleus, plastid	43.89	37.31
CDX99829	Canola	plastid	42.08	37.2
KRH23588	Soybean	nucleus, plastid	42.99	36.4
CDX94671	Canola	plastid	41.18	36.11
CDY35306	Canola	plastid	42.08	35.77
CDX90191	Canola	plastid	42.08	35.5
CDY26987	Canola	cytosol	15.38	35.42
KRH47432	Soybean	plastid	41.63	35.11
Os08t0313600-00	Rice	nucleus	41.63	33.33
Os09t0119100-01	Rice	nucleus, plastid	39.82	32.71
TraesCS5B01G159800.1	Wheat	plastid	40.27	32.25
TraesCS5D01G166600.1	Wheat	nucleus	40.27	32.25
HORVU5Hr1G050690.2	Barley	plastid	39.82	32.0
TraesCS5A01G162300.2	Wheat	nucleus	39.82	32.0
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	19.91	30.77

Protein Annotations

EnsemblPlants:CDY41114	EnsemblPlantsGene:GSBRNA2T00072456001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:CUE
InterPro:IPR003892	ncoils:Coil	PANTHER:PTHR31245	PFAM:PF02845	PFscan:PS51140	ProteinID:CDY41114
ProteinID:CDY41114.1	SEG:seg	UniParc:UPI0004EE6193	UniProt:A0A078HUT6	MapMan:35.2	:

Description

BnaC05g11050DBnaC05g11050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUT6]

Coordinates

chrLK032490:-:177047..178785

Molecular Weight (calculated)

25015.6 Da

IEP (calculated)

6.368

GRAVY (calculated)

-0.620

Length

221 amino acids

Sequence
(BLAST)

001: MSAVYCGSKR SYFEDIPSSK RFRCYSPSDS PIWSSPPSSS LDQLRTAFPH LELTVLVKAL EEHGNDICAA MRSLHSEKKA EKLANKEFHA VAGGTEVTQS
101: TGIDDAKVRA SKVLEALEQA LSSRAREEAG KIFQEEKVAV QQQVEDLMKD NTVLKRAVAI QHERQKAFED ANQQLELLKQ VIPQYQEKIR NLEMNNYALN
201: LRLQQAEQGN SMLERFNPDV Y

Best Arabidopsis Sequence Match ( AT1G80040.1 )
(BLAST)

001: MSAVYCGTKR SYFDDNSSPP SSKRFRCFSP SNSPIWSSPP SSSLDQLHSA FPHIELTVLV KALEDNGSDF NAAMKSLYSF ASSEEKKAEE LAAGGAATQE
101: TDAVCGGNPP TSGDDWVELL VREVLQSSGT DDAKVRAARV LEALEKMLSA RAREEAGNKF QEEKVAVQQQ VETLVKDNTV LKRAVAIQHE RQKALEDANH
201: QLGLLKQLVP QYQEKLRNLE VNNYALRMQL QQVEHGNSMP ARFNPDVF

Arabidopsis Description

F18B13.13 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSD3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.