Factsheet for VIT_09s0002g07130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073448	Potato	plastid	56.47	54.75
Solyc03g116780.2.1	Tomato	plastid	53.33	52.31
VIT_11s0016g05730.t01	Wine grape	plastid	58.04	52.3
PGSC0003DMT400001668	Potato	plastid	52.16	51.55
PGSC0003DMT400073696	Potato	nucleus	49.8	50.0
KRH44476	Soybean	plastid	50.59	49.62
KRH09716	Soybean	nucleus, plastid	48.63	47.69
KRH23588	Soybean	nucleus, plastid	47.84	46.74
KRH47432	Soybean	plastid	47.06	45.8
Os09t0119100-01	Rice	nucleus, plastid	46.67	44.24
CDY41114	Canola	nucleus, plastid	38.04	43.89
Solyc12g042750.1.1	Tomato	nucleus, plastid	41.57	43.8
CDY70430	Canola	plastid	41.96	43.67
AT1G80040.1	Thale cress	nucleus, plastid	42.35	43.55
CDX67941	Canola	plastid	41.18	43.39
Bra003546.1-P	Field mustard	plastid	41.57	43.27
CDY37566	Canola	nucleus, plastid	41.57	43.09
Bra008498.1-P	Field mustard	nucleus, plastid	41.18	42.68
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	23.92	42.66
Os08t0313600-00	Rice	nucleus	43.14	39.86
TraesCS5B01G159800.1	Wheat	plastid	42.35	39.13
HORVU5Hr1G050690.2	Barley	plastid	41.96	38.91
TraesCS5D01G166600.1	Wheat	nucleus	41.96	38.77
TraesCS5A01G162300.2	Wheat	nucleus	40.78	37.82
VIT_08s0007g00080.t01	Wine grape	nucleus, plastid	38.43	35.77

Protein Annotations

EntrezGene:100250980	wikigene:100250980	MapMan:35.2	EMBL:AM450402	ProteinID:CAN67646	ProteinID:CAN67646.1
ProteinID:CBI36343	ProteinID:CBI36343.3	ncoils:Coil	UniProt:D7U147	EMBL:FN596494	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EntrezGene:LOC100250980	wikigene:LOC100250980	PANTHER:PTHR31245	PANTHER:PTHR31245:SF12
SUPFAM:SSF46934	InterPro:UBA-like_sf	UniParc:UPI0001983FDE	ArrayExpress:VIT_09s0002g07130	EnsemblPlantsGene:VIT_09s0002g07130	EnsemblPlants:VIT_09s0002g07130.t01
unigene:Vvi.14164	RefSeq:XP_002264846	RefSeq:XP_002264846.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:7074062..7079097

Molecular Weight (calculated)

28881.3 Da

IEP (calculated)

6.878

GRAVY (calculated)

-0.592

Length

255 amino acids

Sequence
(BLAST)

001: MSAAVCGSKR SFMDDIETTP PQASKKLRCS SNSPPRCSPP SAPLRQLAAT FPLLDFQVLE RALAECDNDL DSAMKSLHEH HSRYMEKRIG SVEGTFAANM
101: DKGSITADGT AFSNNLPVDG GEWVELFVRE MMNAANVDDA RARATRALNG LEKSISARSD AEVAQTFYKE NIMLKEQLEV LMRENTILKR GVAIQHERQR
201: EYDDRNRELQ MLKHLVPQYQ EQLRTLEVKN YTLSMHLRHM QQSSSVTGRF NPDIF

Best Arabidopsis Sequence Match ( AT5G32440.1 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.