Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 51.46 | 53.41 |
| GSMUA_Achr5P28620_001 | Banana | cytosol | 52.55 | 52.55 |
| AT5G02510.2 | Thale cress | plastid | 39.05 | 42.29 |
| VIT_09s0002g07130.t01 | Wine grape | nucleus, plastid | 35.77 | 38.43 |
| VIT_11s0016g05730.t01 | Wine grape | plastid | 37.23 | 36.04 |
Protein Annotations
| Gene3D:1.10.8.10 | EntrezGene:100247807 | wikigene:100247807 | MapMan:35.2 | EMBL:AM483089 | ProteinID:CAN79697 |
| ProteinID:CAN79697.1 | ProteinID:CBI30579 | ProteinID:CBI30579.3 | InterPro:CUE | ncoils:Coil | UniProt:D7THR3 |
| EMBL:FN595991 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR003892 | EntrezGene:LOC100247807 |
| wikigene:LOC100247807 | PFAM:PF02845 | PFscan:PS51140 | PANTHER:PTHR31245 | PANTHER:PTHR31245:SF6 | SMART:SM00546 |
| SUPFAM:SSF46934 | InterPro:UBA-like_sf | UniParc:UPI00015C9EA3 | ArrayExpress:VIT_08s0007g00080 | EnsemblPlantsGene:VIT_08s0007g00080 | EnsemblPlants:VIT_08s0007g00080.t01 |
| RefSeq:XP_002263099 | RefSeq:XP_002263099.2 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr8:-:14460402..14472600
Molecular Weight (calculated)
30835.1 Da
IEP (calculated)
5.098
GRAVY (calculated)
-0.615
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAGVCGKRV GFEEIFGSSS TSSKRSRCST FGSPVRSSDF GSGSDDSVSV LLQMFPNLDR EMVETVLRTH NNKIEDAIES LHALSLGDTI ARNESQGLDS
101: AMMGNNDTGP AQSEHEYGQT TEQKVEDVQD LKSMFEFGNA MDGSKWVDLF VHEMMNATDL SDARARAARI LEAFEKNVVS HSMELKELEH ASLKEHLQNF
201: LRDNQILKRA VAIQHDRNLE QEERAREVQQ LKDVIRQYQE QVRALELNNY TLKLHLQRAQ GSSSIPGQFH PDIF
101: AMMGNNDTGP AQSEHEYGQT TEQKVEDVQD LKSMFEFGNA MDGSKWVDLF VHEMMNATDL SDARARAARI LEAFEKNVVS HSMELKELEH ASLKEHLQNF
201: LRDNQILKRA VAIQHDRNLE QEERAREVQQ LKDVIRQYQE QVRALELNNY TLKLHLQRAQ GSSSIPGQFH PDIF
001: MFNCSSLSLP FFFTAIARRC RFLSSSSSPT NKRTKWSSFG SPIRSSETGS GSDDPVASLI HVFPTMDPEF VREVMSNKNY VFEEAKESLS SILFNGDSDR
101: TEAGFFDGSV ESWNDEDMID GAKWVDRLVS EMTKAINIDD MRRRVAVILE ALESIIKKNT NASKKLEYAS MKESLQSLIN DNQILKRVIA NQHQRSSENE
201: EKAKQVLHLR GVVGQYQEQV HKLELSNYAM KLHLQRSQQQ QTSFSGNLPP DIY
101: TEAGFFDGSV ESWNDEDMID GAKWVDRLVS EMTKAINIDD MRRRVAVILE ALESIIKKNT NASKKLEYAS MKESLQSLIN DNQILKRVIA NQHQRSSENE
201: EKAKQVLHLR GVVGQYQEQV HKLELSNYAM KLHLQRSQQQ QTSFSGNLPP DIY
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1); Has 166 Blast hits to 166 proteins in 31 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - /.../urce: NCBI BLink). [Source:TAIR;Acc:AT5G02510]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.