Factsheet for Bra003546.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67941	Canola	plastid	93.88	95.04
AT1G80040.1	Thale cress	nucleus, plastid	72.65	71.77
Bra008498.1-P	Field mustard	nucleus, plastid	70.2	69.92
PGSC0003DMT400073448	Potato	plastid	45.31	42.21
VIT_09s0002g07130.t01	Wine grape	nucleus, plastid	43.27	41.57
Bra032320.1-P	Field mustard	plastid	41.63	41.46
PGSC0003DMT400073696	Potato	nucleus	42.86	41.34
PGSC0003DMT400001668	Potato	plastid	42.86	40.7
KRH09716	Soybean	nucleus, plastid	42.86	40.38
KRH44476	Soybean	plastid	42.86	40.38
Solyc03g116780.2.1	Tomato	plastid	42.86	40.38
Solyc12g042750.1.1	Tomato	nucleus, plastid	39.18	39.67
Bra030141.1-P	Field mustard	nucleus	31.02	39.58
Bra010829.1-P	Field mustard	plastid	42.04	39.16
KRH23588	Soybean	nucleus, plastid	41.63	39.08
Os09t0119100-01	Rice	nucleus, plastid	40.82	37.17
KRH47432	Soybean	plastid	39.59	37.02
Os08t0313600-00	Rice	nucleus	40.0	35.51
TraesCS5D01G166600.1	Wheat	nucleus	39.18	34.78
TraesCS5A01G162300.2	Wheat	nucleus	37.96	33.82
TraesCS5B01G159800.1	Wheat	plastid	37.96	33.7
HORVU5Hr1G050690.2	Barley	plastid	36.73	32.73
Solyc06g068190.1.1	Tomato	cytosol, nucleus, peroxisome	18.37	31.47

Protein Annotations

EnsemblPlants:Bra003546.1	EnsemblPlants:Bra003546.1-P	EnsemblPlantsGene:Bra003546	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PFAM:PF02845
PFscan:PS51140	SEG:seg	SUPFAM:SSF46934	UniParc:UPI00025419D1	UniProt:M4CH63	MapMan:35.2

Description

AT1G80040 (E=8e-075) | unknown protein

Coordinates

chrA07:-:13732149..13733437

Molecular Weight (calculated)

27423.0 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.606

Length

245 amino acids

Sequence
(BLAST)

001: MSAVYCGSKR SYFDDTPSPP PSSKRFRCYS PSNSPSWSSS SPSSSLDQLR AAFPHLELTV LVEALEEHGS DLSAAMKSLY ALVSSAEEEK RAQDLAAANK
101: ETGTFTASGD DWVALLVREV TQSSGQDDAK FRAERVLEAL EKTLSARAHE EAGKKFQEES VAVQQQVEAL MKDNTVLKRA VAIQHERQKA LEDANQQLEF
201: FKQLIPQYQE KVRNLEVNNY ALKLQLEQME HGSSMMPQRF NPDVF

Best Arabidopsis Sequence Match ( AT1G80040.1 )
(BLAST)

001: MSAVYCGTKR SYFDDNSSPP SSKRFRCFSP SNSPIWSSPP SSSLDQLHSA FPHIELTVLV KALEDNGSDF NAAMKSLYSF ASSEEKKAEE LAAGGAATQE
101: TDAVCGGNPP TSGDDWVELL VREVLQSSGT DDAKVRAARV LEALEKMLSA RAREEAGNKF QEEKVAVQQQ VETLVKDNTV LKRAVAIQHE RQKALEDANH
201: QLGLLKQLVP QYQEKLRNLE VNNYALRMQL QQVEHGNSMP ARFNPDVF

Arabidopsis Description

F18B13.13 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSD3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.