Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0184500-01 | Rice | cytosol | 73.86 | 61.32 |
| TraesCS6B01G172800.1 | Wheat | nucleus, plastid | 89.2 | 56.27 |
| TraesCS6D01G133600.4 | Wheat | nucleus, plastid | 89.2 | 54.51 |
| TraesCS6A01G144700.3 | Wheat | nucleus, plastid | 88.64 | 54.17 |
| HORVU4Hr1G065880.1 | Barley | cytosol | 21.59 | 50.0 |
| EES04652 | Sorghum | plastid | 71.59 | 45.49 |
| Zm00001d015571_P001 | Maize | plastid | 71.59 | 45.49 |
| HORVU6Hr1G030160.1 | Barley | cytosol | 43.18 | 44.44 |
| HORVU0Hr1G022500.1 | Barley | nucleus, plastid | 59.09 | 37.41 |
| GSMUA_Achr4P20300_001 | Banana | nucleus, plastid | 59.09 | 36.11 |
| GSMUA_Achr7P05400_001 | Banana | nucleus, plastid | 53.98 | 33.69 |
| HORVU5Hr1G050690.2 | Barley | plastid | 44.89 | 28.73 |
| HORVU0Hr1G022480.3 | Barley | cytosol | 32.95 | 26.13 |
| HORVU0Hr1G022570.1 | Barley | nucleus | 36.36 | 20.65 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G028290.2 | EnsemblPlantsGene:HORVU6Hr1G028290 | ncoils:Coil | PANTHER:PTHR31245 | PANTHER:PTHR31245:SF7 | UniParc:UPI000296918C |
| UniProt:M0UMS6 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:112171576..112174469
Molecular Weight (calculated)
20220.9 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.666
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPFYSFING NNLQCWTGNG QLDAISGNPH ATDNCQTNHH SSEWVELFVR EMMSASDIND ARARASRALE VIEKSIMERT GAEAVQNLHK ENAMLKEQLA
101: IALRENAVLK RGVAIQHERQ KEFDDKTQEV HNLKQLILQY QEQLKTLEIN NYALRMHLQQ AQQNSSMPGR FHPDVC
101: IALRENAVLK RGVAIQHERQ KEFDDKTQEV HNLKQLILQY QEQLKTLEIN NYALRMHLQQ AQQNSSMPGR FHPDVC
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.