Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P05400_001 | Banana | nucleus, plastid | 79.51 | 81.21 |
| Os02t0184500-01 | Rice | cytosol | 45.49 | 61.79 |
| Zm00001d046602_P001 | Maize | plastid | 59.72 | 61.21 |
| Zm00001d036760_P001 | Maize | plastid | 57.99 | 59.22 |
| HORVU6Hr1G028290.2 | Barley | cytosol | 36.11 | 59.09 |
| EER90099 | Sorghum | plastid | 57.99 | 58.6 |
| TraesCS6B01G172800.1 | Wheat | nucleus, plastid | 56.25 | 58.06 |
| Os06t0642900-01 | Rice | nucleus, plastid | 54.86 | 57.45 |
| TraesCS6D01G133600.4 | Wheat | nucleus, plastid | 56.6 | 56.6 |
| GSMUA_Achr4P06060_001 | Banana | cytosol, plastid | 54.17 | 56.32 |
| TraesCS6A01G144700.3 | Wheat | nucleus, plastid | 55.9 | 55.9 |
| EES04652 | Sorghum | plastid | 52.08 | 54.15 |
| Zm00001d015571_P001 | Maize | plastid | 52.08 | 54.15 |
| HORVU0Hr1G022500.1 | Barley | nucleus, plastid | 51.39 | 53.24 |
| TraesCS7B01G438200.1 | Wheat | plastid | 52.08 | 53.0 |
| TraesCS7D01G510900.1 | Wheat | nucleus, plastid | 51.04 | 51.94 |
| TraesCS7A01G521400.1 | Wheat | nucleus, plastid | 50.69 | 51.77 |
| HORVU4Hr1G065880.1 | Barley | cytosol | 13.54 | 51.32 |
| HORVU6Hr1G030160.1 | Barley | cytosol | 27.08 | 45.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.38 | 37.5 |
| TraesCS7B01G438300.1 | Wheat | cytosol | 32.64 | 37.01 |
| GSMUA_Achr5P28620_001 | Banana | cytosol | 35.07 | 36.86 |
| HORVU0Hr1G022480.3 | Barley | cytosol | 27.78 | 36.04 |
| TraesCS7B01G438800.1 | Wheat | cytosol | 31.25 | 35.29 |
| Os06t0642650-01 | Rice | mitochondrion | 31.94 | 34.72 |
| EER88702 | Sorghum | plastid | 32.29 | 34.07 |
| TraesCS7A01G521600.1 | Wheat | cytosol | 30.21 | 33.85 |
| TraesCS7D01G511100.1 | Wheat | cytosol, mitochondrion, nucleus | 29.86 | 33.73 |
| Zm00001d036761_P001 | Maize | cytosol | 30.21 | 31.99 |
| HORVU0Hr1G022570.1 | Barley | nucleus | 31.6 | 29.35 |
| TraesCS2D01G174900.1 | Wheat | cytosol | 11.11 | 29.09 |
| TraesCS6A01G294400.1 | Wheat | cytosol | 18.4 | 28.04 |
| TraesCS3B01G495900.1 | Wheat | cytosol | 17.01 | 28.0 |
| TraesCS2D01G471100.1 | Wheat | cytosol | 13.19 | 27.94 |
| TraesCS4D01G164300.2 | Wheat | cytosol | 17.71 | 26.98 |
| TraesCS4A01G162800.1 | Wheat | cytosol | 17.36 | 26.45 |
| TraesCS2D01G241500.1 | Wheat | cytosol | 17.36 | 26.45 |
| TraesCS2B01G510600.2 | Wheat | plastid | 15.28 | 18.18 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P20300_001 | EnsemblPlants:GSMUA_Achr4T20300_001 | EnsemblPlantsGene:GSMUA_Achr4G20300_001 | Gene3D:1.10.8.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:CUE | InterPro:IPR003892 | InterPro:UBA-like_sf | ncoils:Coil | PANTHER:PTHR31245 |
| PANTHER:PTHR31245:SF7 | PFscan:PS51140 | SUPFAM:SSF46934 | UniParc:UPI000296562C | UniProt:M0SQJ3 | MapMan:35.2 |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G20300_001]
Coordinates
chr4:-:20959987..20964068
Molecular Weight (calculated)
31809.7 Da
IEP (calculated)
5.094
GRAVY (calculated)
-0.364
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAVVCGKRS SSIFDELLHA NTPPASKRVR CASSPTTSLR VSPSRASPSF DLNDGDLIAA YLARLRSLFP DMDQQLLERT LEVSGNDLDS AIKSLNDLRL
101: GAADFNLVSG VSKSENGAEM NVQLPTEGTM KANGVDSAAA IGLPNVDALP TDGSEWVELF VREMMSAADI DDARTRASRA LEFLEKSIMA RAGAEVIENL
201: HKENMVLKEQ VEVLLRENSV LKRAVAIQHD RQKEYEEKSQ ELQHLKQLVS QYQEQVRTLE INNYALSMHL RQAQQGSSIP GRFHPDVF
101: GAADFNLVSG VSKSENGAEM NVQLPTEGTM KANGVDSAAA IGLPNVDALP TDGSEWVELF VREMMSAADI DDARTRASRA LEFLEKSIMA RAGAEVIENL
201: HKENMVLKEQ VEVLLRENSV LKRAVAIQHD RQKEYEEKSQ ELQHLKQLVS QYQEQVRTLE INNYALSMHL RQAQQGSSIP GRFHPDVF
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.