CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015571_P001	Maize	plastid	87.36	87.36
Os02t0184500-01	Rice	cytosol	61.37	80.19
HORVU6Hr1G028290.2	Barley	cytosol	45.49	71.59
TraesCS6B01G172800.1	Wheat	nucleus, plastid	70.4	69.89
TraesCS6A01G144700.3	Wheat	nucleus, plastid	71.12	68.4
TraesCS6D01G133600.4	Wheat	nucleus, plastid	70.76	68.06
EER90099	Sorghum	plastid	62.82	61.05
GSMUA_Achr7P05400_001	Banana	nucleus, plastid	53.43	52.48
GSMUA_Achr4P20300_001	Banana	nucleus, plastid	54.15	52.08
EER88702	Sorghum	plastid	29.24	29.67
OQU87149	Sorghum	cytosol, mitochondrion, nucleus	19.49	29.03

Protein Annotations

EnsemblPlants:EES04652	EnsemblPlantsGene:SORBI_3004G068500	EntrezGene:8077638	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PANTHER:PTHR31245:SF7
PFAM:PF02845	PFscan:PS51140	ProteinID:EES04652	ProteinID:EES04652.1	RefSeq:XP_002451676.1	SEG:seg
SUPFAM:SSF46934	unigene:Sbi.2659	UniParc:UPI0001A856CB	UniProt:C5XWY0	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:+:5581775..5585117

Molecular Weight (calculated)

30826.6 Da

IEP (calculated)

6.448

GRAVY (calculated)

-0.512

Length

277 amino acids

Sequence
(BLAST)

001: MSAVVCGKRS SIFGDDLVAS PSSPPSPSHH HHPAKRARCS PSRRREVLLH HHLLPLFPDM DPQLLEKALE ASGDDLDSAI KRLNELRLES AGAMLSGTLC
101: ESENGMSSAL KLSAEGTASN GHLDVATENP PATDNSQASH HSSEWVELFV KEMMSSSDID DARARASRAL EVFEKSIMDR VGAEAVQNLH RENVMLKEQL
201: AIILRENAVL KRGVAIQHER QKDFDMRTQE VDSLKQLVLQ YQEQLKTLEI NNYALRVHLK QAQQNNSMPG RFPPDVF

Best Arabidopsis Sequence Match ( AT5G32440.1 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.