Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046602_P001 | Maize | plastid | 85.61 | 86.83 |
| Zm00001d036760_P001 | Maize | plastid | 84.21 | 85.11 |
| Os06t0642900-01 | Rice | nucleus, plastid | 71.93 | 74.55 |
| HORVU0Hr1G022500.1 | Barley | nucleus, plastid | 64.56 | 66.19 |
| TraesCS7B01G438200.1 | Wheat | plastid | 64.21 | 64.66 |
| TraesCS7D01G510900.1 | Wheat | nucleus, plastid | 64.21 | 64.66 |
| TraesCS7A01G521400.1 | Wheat | nucleus, plastid | 62.81 | 63.48 |
| EES04652 | Sorghum | plastid | 61.05 | 62.82 |
| HORVU4Hr1G065880.1 | Barley | cytosol | 15.79 | 59.21 |
| GSMUA_Achr7P05400_001 | Banana | nucleus, plastid | 57.89 | 58.51 |
| GSMUA_Achr4P20300_001 | Banana | nucleus, plastid | 58.6 | 57.99 |
| HORVU6Hr1G030160.1 | Barley | cytosol | 32.63 | 54.39 |
| OQU87149 | Sorghum | cytosol, mitochondrion, nucleus | 20.35 | 31.18 |
| EER88702 | Sorghum | plastid | 29.47 | 30.77 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:35.2 | EntrezGene:8058395 | UniProt:C5Z6N4 | InterPro:CUE | ncoils:Coil |
| EnsemblPlants:EER90099 | ProteinID:EER90099 | ProteinID:EER90099.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR003892 | PFAM:PF02845 | PFscan:PS51140 | PANTHER:PTHR31245 | PANTHER:PTHR31245:SF7 | EnsemblPlantsGene:SORBI_3010G204300 |
| SUPFAM:SSF46934 | unigene:Sbi.6309 | InterPro:UBA-like_sf | UniParc:UPI0001A89A8B | RefSeq:XP_002438732.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr10:-:54660213..54663190
Molecular Weight (calculated)
31509.0 Da
IEP (calculated)
6.442
GRAVY (calculated)
-0.671
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAVVCGKRS SSIFADELLP PSPPSPHSSS PHQPPAKRSR RSPSHRGGGG GGNDGRRREA LVHHLLALFP DMDPQLLEKA LEASGDDLDS AIKSLNLLRL
101: ESTSTGFKPE NGQHTTIQPS VEGIPNGGVD TVTVTEHPPT VDNYQTSNNG SEWVELFVRE MTNASDIDDA RARASRALEA LEKSIVERAG AEATQNVHKE
201: NMMLKEQLTV VLRENAVLKR AVAIQHERQK EFDERSHEVQ SLKQLVLQYQ EQVRTLEMNN YALTMHLKQA QQNSSIPGRF NPDVF
101: ESTSTGFKPE NGQHTTIQPS VEGIPNGGVD TVTVTEHPPT VDNYQTSNNG SEWVELFVRE MTNASDIDDA RARASRALEA LEKSIVERAG AEATQNVHKE
201: NMMLKEQLTV VLRENAVLKR AVAIQHERQK EFDERSHEVQ SLKQLVLQYQ EQVRTLEMNN YALTMHLKQA QQNSSIPGRF NPDVF
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.