Factsheet for Os06t0642900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046602_P001	Maize	plastid	78.91	77.22
Zm00001d036760_P001	Maize	plastid	76.0	74.11
EER90099	Sorghum	plastid	74.55	71.93
Os02t0184500-01	Rice	cytosol	54.91	71.23
HORVU0Hr1G022500.1	Barley	nucleus, plastid	68.0	67.27
TraesCS7B01G438200.1	Wheat	plastid	68.0	66.08
TraesCS7D01G510900.1	Wheat	nucleus, plastid	67.27	65.37
TraesCS7A01G521400.1	Wheat	nucleus, plastid	66.18	64.54
HORVU4Hr1G065880.1	Barley	cytosol	16.0	57.89
GSMUA_Achr7P05400_001	Banana	nucleus, plastid	58.18	56.74
GSMUA_Achr4P20300_001	Banana	nucleus, plastid	57.45	54.86
HORVU6Hr1G030160.1	Barley	cytosol	32.73	52.63
Os09t0119100-01	Rice	nucleus, plastid	45.82	46.84
Os08t0313600-00	Rice	nucleus	42.91	42.75
Os06t0642650-01	Rice	mitochondrion	31.64	32.83

Protein Annotations

Gene3D:1.10.8.10	MapMan:35.2	EntrezGene:4341635	EMBL:AK073896	ProteinID:BAD37363.1	ProteinID:BAF20088.1
ProteinID:BAS98825.1	InterPro:CUE	ncoils:Coil	ProteinID:EAZ37789.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0016705
GO:GO:0020037	GO:GO:0055114	InterPro:IPR003892	EnsemblPlantsGene:Os06g0642900	EnsemblPlants:Os06t0642900-01	PFAM:PF02845
PFscan:PS51140	PANTHER:PTHR31245	PANTHER:PTHR31245:SF7	UniProt:Q67WV6	SUPFAM:SSF46934	InterPro:UBA-like_sf
UniParc:UPI0000426276	RefSeq:XP_015643930.1	SEG:seg	:	:	:

Description

Ubiquitin system component Cue domain containing protein. (Os06t0642900-01)

Coordinates

chr6:-:26183542..26187011

Molecular Weight (calculated)

30228.6 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.538

Length

275 amino acids

Sequence
(BLAST)

001: MSAVVCGKRS SAIFADDLLP PSPPSPHSHH HPAKRSCRSP HRRREAHLHH LSSLFPGMDP QLLEGALDAS GDDLDSAIKS LNNLRLESTE AILSATGCKS
101: ENGLPTAVYP SVEGIVNNGG VSTANEHPAA ADSCQTGNNG SEWVELFVRE MTNASDMGDA RARASRALEV LEKSIVERTG ADAAQNLQKE NMMLKEQLTV
201: VLRENAVLKR AVAIQHERQK EFDERSQEVQ SLKQLVVQYQ EQLRTLEINN YALTMHLKQA QQNNSIPGHF NPDVF

Best Arabidopsis Sequence Match ( AT5G32440.3 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.