Factsheet for TraesCS7B01G438200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G022500.1	Barley	nucleus, plastid	90.11	91.73
TraesCS7D01G510900.1	Wheat	nucleus, plastid	89.05	89.05
TraesCS7A01G521400.1	Wheat	nucleus, plastid	87.63	87.94
Zm00001d046602_P001	Maize	plastid	67.84	68.33
Os06t0642900-01	Rice	nucleus, plastid	66.08	68.0
HORVU4Hr1G065880.1	Barley	cytosol	18.02	67.11
Zm00001d036760_P001	Maize	plastid	64.31	64.54
EER90099	Sorghum	plastid	64.66	64.21
HORVU6Hr1G030160.1	Barley	cytosol	37.46	61.99
TraesCS6B01G172800.1	Wheat	nucleus, plastid	57.95	58.78
GSMUA_Achr7P05400_001	Banana	nucleus, plastid	53.36	53.55
GSMUA_Achr4P20300_001	Banana	nucleus, plastid	53.0	52.08
TraesCS5B01G159800.1	Wheat	plastid	40.99	42.03
TraesCS5B01G501600.1	Wheat	cytosol	22.26	35.39
TraesCS7B01G438300.1	Wheat	cytosol	31.45	35.04
TraesCS7B01G438800.1	Wheat	cytosol	31.1	34.51
TraesCS5B01G495600.1	Wheat	cytosol	20.85	33.52
TraesCS3B01G495900.1	Wheat	cytosol	16.61	26.86
TraesCS2B01G510600.2	Wheat	plastid	17.67	20.66

Protein Annotations

EnsemblPlants:TraesCS7B01G438200.1	EnsemblPlantsGene:TraesCS7B01G438200	Gene3D:1.10.8.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CUE	InterPro:IPR003892	InterPro:UBA-like_sf	ncoils:Coil	PANTHER:PTHR31245	PANTHER:PTHR31245:SF7
PFAM:PF02845	PFscan:PS51140	SEG:seg	SUPFAM:SSF46934	TIGR:cd14279	MapMan:35.2

Description

No Description!

Coordinates

chr7B:+:704279723..704282760

Molecular Weight (calculated)

30984.3 Da

IEP (calculated)

6.127

GRAVY (calculated)

-0.561

Length

283 amino acids

Sequence
(BLAST)

001: MSAVVCGKRS SSIFADDLLL QQASSSSPPS PRHSPAPKRS RYAHHHLRRD GRDALLNHLR AAFPAMDPQL LERALEASGD DLDDAIKSLK ELHLMESNQA
101: NLSAAGSAFE NGPTAVQPSV EGIVTSGGVD TATEHQPAAA SQQPSNSGPE WVDLFVREMS NASDMDDARA RASRALEALT KSILEGAGAE AAQSLHQENM
201: MLKEQMTAVL SQNAVLKRAV AIQHERQKEF DERSHEVQGL KQLVLQYQEQ LRTLEINNYA LQMHLKQAQQ SSSMPGRYNP DVF

Best Arabidopsis Sequence Match ( AT5G32440.1 )
(BLAST)

001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGSAKE EPNVLNLDGT EWVELFVREM MNASDMKDAK ARAARALEAL EKSINARTGT DAMQNLQQEN MMLKQQLEAI VQENSLLKRA
201: VVTQQKRQRE SEDQSQELQH LRQLVTQYQE QLRTLEVNNY ALTLHLKQAQ QNSSIPGRYH PDVF

Arabidopsis Description

Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.