Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G144700.3 | Wheat | nucleus, plastid | 98.61 | 98.61 |
| TraesCS6B01G172800.1 | Wheat | nucleus, plastid | 95.49 | 98.57 |
| HORVU6Hr1G028290.2 | Barley | cytosol | 54.51 | 89.2 |
| Os02t0184500-01 | Rice | cytosol | 57.29 | 77.83 |
| Zm00001d015571_P001 | Maize | plastid | 68.75 | 71.48 |
| EES04652 | Sorghum | plastid | 68.06 | 70.76 |
| GSMUA_Achr4P20300_001 | Banana | nucleus, plastid | 56.6 | 56.6 |
| GSMUA_Achr7P05400_001 | Banana | nucleus, plastid | 54.51 | 55.67 |
| TraesCS7D01G510900.1 | Wheat | nucleus, plastid | 54.17 | 55.12 |
| TraesCS5D01G166600.1 | Wheat | nucleus | 37.85 | 39.49 |
| TraesCS7D01G511100.1 | Wheat | cytosol, mitochondrion, nucleus | 30.56 | 34.51 |
| TraesCS2D01G174900.1 | Wheat | cytosol | 12.15 | 31.82 |
| TraesCS4D01G164300.2 | Wheat | cytosol | 19.79 | 30.16 |
| TraesCS2D01G241500.1 | Wheat | cytosol | 19.44 | 29.63 |
| TraesCS2D01G471100.1 | Wheat | cytosol | 13.54 | 28.68 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G133600.4 | EnsemblPlantsGene:TraesCS6D01G133600 | Gene3D:1.10.8.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:CUE | InterPro:IPR003892 | InterPro:UBA-like_sf | ncoils:Coil | PANTHER:PTHR31245 | PANTHER:PTHR31245:SF7 |
| PFAM:PF02845 | PFscan:PS51140 | SEG:seg | SUPFAM:SSF46934 | TIGR:cd14279 | MapMan:35.2 |
Description
No Description!
Coordinates
chr6D:-:101229088..101233949
Molecular Weight (calculated)
32154.0 Da
IEP (calculated)
6.146
GRAVY (calculated)
-0.517
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAVVCGKRS SIFADELIPS SPPSPPHHHP SKRARCSPTR AFDDAAAAHR REALLHHLRS LFPHMDPQLL ERALEASGDD LDFAIRSLND LRLESAEAIF
101: SAAVSEPENG LSTALKLSAE GMLIEFTSEG NGQLDAISGN PPATDNCQTN HHSSEWVELF VREMMSASDI NDARARASRA LEVIEKSIME RTGAEAVQNL
201: HKENTMLKEQ LAIALRENAV LKRGVAIQHE RQKEFDDKTQ EVHNLKQLIL QYQEQLKTLE INNYALRMHL QQAQQNSSMP GRFHPDVC
101: SAAVSEPENG LSTALKLSAE GMLIEFTSEG NGQLDAISGN PPATDNCQTN HHSSEWVELF VREMMSASDI NDARARASRA LEVIEKSIME RTGAEAVQNL
201: HKENTMLKEQ LAIALRENAV LKRGVAIQHE RQKEFDDKTQ EVHNLKQLIL QYQEQLKTLE INNYALRMHL QQAQQNSSMP GRFHPDVC
001: MSAIVCGKRS LFEDLAAASP PVSKKLRCFS SSSSSRFSPP IPPSSSLLLD HLAAIFPDMD KQILERAIEE CGDDLDSAIR CLNQLRLESA NKNSDSATNQ
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
101: SPVVIQEPNV EPQQQGRSAK EEPNVLNLDG TEWVELFVRE MMNASDMKDA KARAARALEA LEKSINARTG TDAMQNLQQE NMMLKQQLEA IVQENSLLKR
201: AVVTQQKRQR ESEDQSQELQ HLRQLVTQYQ EQLRTLEVNN YALTLHLKQA QQNSSIPGRY HPDVF
Arabidopsis Description
Ubiquitin system component Cue protein [Source:UniProtKB/TrEMBL;Acc:F4KED5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.