Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G133600.4 | Wheat | nucleus, plastid | 98.61 | 98.61 |
| TraesCS6B01G172800.1 | Wheat | nucleus, plastid | 94.1 | 97.13 |
| HORVU6Hr1G028290.2 | Barley | cytosol | 54.17 | 88.64 |
| Os02t0184500-01 | Rice | cytosol | 57.64 | 78.3 |
| Zm00001d015571_P001 | Maize | plastid | 68.75 | 71.48 |
| EES04652 | Sorghum | plastid | 68.4 | 71.12 |
| TraesCS7A01G521400.1 | Wheat | nucleus, plastid | 54.86 | 56.03 |
| GSMUA_Achr4P20300_001 | Banana | nucleus, plastid | 55.9 | 55.9 |
| GSMUA_Achr7P05400_001 | Banana | nucleus, plastid | 54.17 | 55.32 |
| TraesCS5A01G162300.2 | Wheat | nucleus | 36.81 | 38.55 |
| TraesCS7A01G521600.1 | Wheat | cytosol | 31.94 | 35.8 |
| TraesCS5A01G482500.1 | Wheat | cytosol, mitochondrion, nucleus | 19.1 | 31.43 |
| TraesCS6A01G294400.1 | Wheat | cytosol | 20.14 | 30.69 |
| TraesCS4A01G162800.1 | Wheat | cytosol | 19.1 | 29.1 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G144700.3 | EnsemblPlantsGene:TraesCS6A01G144700 | Gene3D:1.10.8.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:CUE | InterPro:IPR003892 | InterPro:UBA-like_sf | ncoils:Coil | PANTHER:PTHR31245 | PANTHER:PTHR31245:SF7 |
| PFAM:PF02845 | PFscan:PS51140 | SEG:seg | SUPFAM:SSF46934 | TIGR:cd14279 | MapMan:35.2 |
Description
No Description!
Coordinates
chr6A:-:121885457..121890418
Molecular Weight (calculated)
32213.0 Da
IEP (calculated)
6.273
GRAVY (calculated)
-0.534
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAVVCGKRS SIFADELIPS SPPSPPHHHP SKRSRCSPTR AFDDAAAAHR REALLHHLRS LFPHMDPQLL ERALEASGDD LDFAIRSLND LRLESAEAIF
101: SAAFSEPENG LSTALKLSAE GMLIEFTSEG NGQLDAISGN PPATDNCQTN HHSSEWVELF VREMMSASDI NDARARASRA LEVIEKSIME RTGAEAVQNL
201: HKENKMLKEQ LAIALRENAV LKRGVAIQHE RQKEFDDKTQ EVHNLKQLIL QYQEQLKTLE INNYALRVHL QQAQQNSSMP GRFHPDVC
101: SAAFSEPENG LSTALKLSAE GMLIEFTSEG NGQLDAISGN PPATDNCQTN HHSSEWVELF VREMMSASDI NDARARASRA LEVIEKSIME RTGAEAVQNL
201: HKENKMLKEQ LAIALRENAV LKRGVAIQHE RQKEFDDKTQ EVHNLKQLIL QYQEQLKTLE INNYALRVHL QQAQQNSSMP GRFHPDVC
001: MSAVYCGTKR SYFDDNSSPP SSKRFRCFSP SNSPIWSSPP SSSLDQLHSA FPHIELTVLV KALEDNGSDF NAAMKSLYSF ASSEEKKAEE LAAGGAATQE
101: TDAVCGGNPP TSGDDWVELL VREVLQSSGT DDAKVRAARV LEALEKMLSA RAREEAGNKF QEEKVAVQQQ VETLVKDNTV LKRAVAIQHE RQKALEDANH
201: QLGLLKQLVP QYQEKLRNLE VNNYALRMQL QQVEHGNSMP ARFNPDVF
101: TDAVCGGNPP TSGDDWVELL VREVLQSSGT DDAKVRAARV LEALEKMLSA RAREEAGNKF QEEKVAVQQQ VETLVKDNTV LKRAVAIQHE RQKALEDANH
201: QLGLLKQLVP QYQEKLRNLE VNNYALRMQL QQVEHGNSMP ARFNPDVF
Arabidopsis Description
F18B13.13 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSD3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.