CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89416
KRG93305
KRH03466
KRH09716
KRH11729
KRH16959
KRH23588
KRH24006
KRH27971
KRH29310
KRH36722
KRH44476
KRH47432
KRH50476
KRH53667
KRH54542
KRH56614
KRH56919
KRH63357
KRH64261
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66720.1	KRH09716	AT1G80040.1	21798944
AT5G66720.1	KRH23588	AT1G80040.1	21798944
AT5G66720.1	KRH44476	AT1G80040.1	21798944
AT5G66720.1	KRH47432	AT1G80040.1	21798944
AT5G66720.1	KRG93305	AT3G27960.1	21798944
AT5G66720.1	KRH56614	AT3G27960.1	21798944
AT5G66720.1	KRH03466	AT3G47620.1	21798944
AT5G66720.1	KRH54542	AT3G47620.1	21798944
AT5G66720.1	KRH56919	AT3G47620.1	21798944
AT5G66720.1	KRH63357	AT3G47620.1	21798944
AT5G66720.1	KRH24006	AT3G48150.1	21798944
AT5G66720.1	KRH27971	AT3G48150.1	21798944
AT5G66720.1	KRH29310	AT3G48150.1	21798944
AT5G66720.1	KRH77487	AT3G48150.1	21798944
AT5G66720.1	KRH16959	AT3G49580.1	21798944
AT5G66720.1	KRH53667	AT3G49580.1	21798944
AT5G66720.1	KRH64261	AT3G49580.1	21798944
AT5G66720.1	KRG89416	AT4G19700.1	21798944
AT5G66720.1	KRH11729	AT4G19700.1	21798944
AT5G66720.1	KRH36722	AT4G19700.1	21798944
AT5G66720.1	KRH50476	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76843	Soybean	plastid	85.82	82.31
KRH69944	Soybean	cytosol, plastid	57.45	66.76
VIT_04s0023g01400.t01	Wine grape	plastid	58.16	64.91
KRH08301	Soybean	cytosol	57.92	64.81
AT5G66720.1	Thale cress	plastid	50.12	51.21
CDY53852	Canola	plastid	48.23	49.88
Bra012095.1-P	Field mustard	plastid	47.52	49.14
CDY30759	Canola	plastid	47.28	48.78
KRH05793	Soybean	mitochondrion	55.79	46.64
KRH15248	Soybean	mitochondrion	55.32	46.25
EER90674	Sorghum	mitochondrion, plastid	46.34	42.06
Zm00001d013027_P002	Maize	mitochondrion	46.1	41.67
Os03t0809300-01	Rice	plastid	46.34	40.92
Zm00001d034575_P001	Maize	plastid	44.44	40.34
KRH30165	Soybean	cytosol	15.37	29.28
KRG98206	Soybean	cytosol	21.51	28.17
KRH10513	Soybean	mitochondrion, plastid	24.82	13.5

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100785804	Gene3D:3.60.40.10	MapMan:35.1	EMBL:ACUP02006760
EnsemblPlantsGene:GLYMA_11G065900	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001932	InterPro:IPR036457	UniProt:K7LNE3
ProteinID:KRH28640.1	ProteinID:KRH28641.1	EnsemblPlants:KRH28642	ProteinID:KRH28642	ProteinID:KRH28642.1	PFAM:PF07228
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR12320	PANTHER:PTHR12320:SF16	SMART:SM00331
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000233D15A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:4958846..4961961

Molecular Weight (calculated)

44767.8 Da

IEP (calculated)

6.884

GRAVY (calculated)

-0.081

Length

423 amino acids

Sequence
(BLAST)

001: MPGILSRLNA TIYCRIREAI TRQQGVPTSL YRSSALPLCS LTSSHTLHTK SMITASHSNA MLGDVYAYGL ISGRGSVRDF TKPAVGCLRG SVNLRRLQPL
101: YGPLSFGCST FDANRRIRDS SLLHGSWLKN FSASSSACYS AGAAHAVSFD GSPPDEQLAN SSFSPDPTIV GGKPLKMLSG SCYLPHPDKE ETGGEDAHFI
201: CTDEQAIGVA DGVGGWADVG VNAGLFAQEL ISNLVRAIQK EPKGSFNLTR VLREAHANTK VKGSSTACIV ALTDKGLHAI NLGDSGFIVV RDGCTIFESP
301: SQQHDFNFPY QLESGNGADL PSSGEVFTIP VASGDVVISG TDGLFDNLYN SEITGVVEHA IRAGLEPQVT AQKIAALARQ RALSKSSRTP FSTAAEKAGF
401: CYYGGKLDDI TVVVSYISGS VSE

Best Arabidopsis Sequence Match ( AT4G33500.1 )
(BLAST)

001: MADHLILSLQ APPFLIFPCS LHRSWRFPGG IRYSVPEFRL SSQLQLANSI SPSKSSASSS SPPENSAPEK FDLVSSTQLK DGSHVFRFGD ASEIEKYLEA
101: EEKARCVEVE TQNAKIAEEA SEVSRKQKKL VSSIIETSTE KEETAAPSDL SNVIKIKDRK RVRSPTKKKK ETVNVSRSED KIDAKSASVS NLSSIVSVAE
201: AIPISSTEEE AVVEKEITAK SYNVEPLSSE AMKKVSVNKI GDCETNGYQE NRMEVQARPS LSTQQEITPV STIEIDDNLD VTEKPIEAEE NLVAEPTATD
301: DLSPDELLST SEATHRSVDE IAQKPVIDTS EENLLNTFEA EENPVVEPTA TAAVSSDELI STSEATRHSV DEIAQKPIID TSEKNPMETF VEPEAVHSSV
401: DESTEKLVVV TSDVENDGEN VASTTEDEIT VRDTITDSGS ISNNDDTKVE DLQLPVPETA SLEPIKAASG REELVSKAFY LDSGFASLQS PFKALAGRED
501: AYFISHHNWI GIADGVSQWS FEGINKGMYA QELMSNCEKI ISNETAKISD PVQVLHRSVN ETKSSGSSTA LIAHLDNNEL HIANIGDSGF MVIRDGTVLQ
601: NSSPMFHHFC FPLHITQGCD VLKLAEVYHV NLEEGDVVIA ATDGLFDNLY EKEIVSIVCG SLKQSLEPQK IAELVAAKAQ EVGRSKTERT PFADAAKEEG
701: YNGHKGGKLD AVTVIISFVK IVST

Arabidopsis Description

Probable protein phosphatase 2C 62 [Source:UniProtKB/Swiss-Prot;Acc:Q93V88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.