CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90619
KRG91274
KRG93828
KRH01494
KRH01744
KRH02746
KRH08093
KRH18264
KRH19120
KRH28787
KRH35533
KRH36141
KRH44140
KRH46935
KRH47114
KRH69796
KRH76667

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	KRH02746	AT2G24570.1	21798944
AT4G19700.1	KRH19120	AT2G24570.1	21798944
AT4G19700.1	KRH01744	AT2G43370.1	21798944
AT4G19700.1	KRH46935	AT2G43370.1	21798944
AT4G19700.1	KRH44140	AT3G13860.1	21798944
AT4G19700.1	KRH47114	AT3G13860.1	21798944
AT4G19700.1	KRG91274	AT4G02770.1	21798944
AT4G19700.1	KRH35533	AT4G02770.1	21798944
AT4G19700.1	KRH02746	AT4G31550.1	21798944
AT4G19700.1	KRH19120	AT4G31550.1	21798944
AT4G19700.1	KRH08093	AT4G36110.1	21798944
AT4G19700.1	KRH28787	AT4G36110.1	21798944
AT4G19700.1	KRH69796	AT4G36110.1	21798944
AT4G19700.1	KRH76667	AT4G36110.1	21798944
AT4G19700.1	KRG90619	AT5G08330.1	21798944
AT4G19700.1	KRH36141	AT5G08330.1	21798944
AT4G19700.1	KRG93828	AT5G38640.1	21798944
AT4G19700.1	KRH01494	AT5G38640.1	21798944
AT4G19700.1	KRH18264	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89416	Soybean	nucleus	86.25	87.9
KRH36722	Soybean	nucleus	57.19	59.03
KRH11729	Soybean	nucleus	56.88	58.15
VIT_10s0042g01070.t01	Wine grape	nucleus	48.75	51.49
AT5G45100.1	Thale cress	cytosol	45.0	48.98
PGSC0003DMT400062617	Potato	nucleus	44.69	47.67
Solyc02g031710.2.1	Tomato	nucleus	45.62	47.1
CDX94520	Canola	cytosol	34.38	47.01
CDY07541	Canola	cytosol	34.38	47.01
CDY09318	Canola	cytosol	34.38	47.01
CDY21311	Canola	cytosol	34.38	47.01
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	46.88	46.44
GSMUA_Achr2P13160_001	Banana	plastid	35.0	45.34
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	41.88	45.27
CDY26402	Canola	cytosol	41.88	45.27
Bra013423.1-P	Field mustard	nucleus	41.56	44.93
CDY01615	Canola	cytosol	42.81	44.92
CDY71607	Canola	cytosol	42.5	44.44
Bra012532.1-P	Field mustard	nucleus	42.5	44.44
CDY51918	Canola	cytosol	39.69	44.25
KRH43767	Soybean	nucleus	34.69	43.87
Solyc02g069180.2.1	Tomato	plastid	38.12	43.11
GSMUA_Achr7P00850_001	Banana	plastid	30.94	43.04
GSMUA_Achr4P32070_001	Banana	nucleus	38.44	43.01
AT4G19700.1	Thale cress	cytosol	40.62	42.76
GSMUA_Achr5P02100_001	Banana	plastid	32.5	42.62
GSMUA_Achr4P28300_001	Banana	nucleus	31.88	42.32
GSMUA_Achr4P23050_001	Banana	nucleus	24.38	41.49
CDY71192	Canola	cytosol	35.31	40.36
KRH13682	Soybean	nucleus	41.88	39.76
CDY13070	Canola	cytosol	34.38	39.43
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	34.06	39.07
CDY18062	Canola	cytosol	34.06	38.65
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	34.06	38.65
GSMUA_Achr6P31690_001	Banana	nucleus	35.94	38.59
CDY46345	Canola	cytosol	33.75	38.3
GSMUA_Achr9P09830_001	Banana	nucleus	35.62	35.51
TraesCS3D01G441300.1	Wheat	mitochondrion	31.25	34.48
TraesCS3D01G441000.1	Wheat	mitochondrion	30.94	34.14
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	25.31	33.89
HORVU4Hr1G003180.3	Barley	mitochondrion	32.19	33.55
TraesCS3B01G484600.1	Wheat	cytosol	28.75	33.45
TraesCS3A01G448500.1	Wheat	mitochondrion	30.62	33.45
TraesCS7D01G431300.1	Wheat	mitochondrion	31.88	32.59
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	30.31	32.01
EER91098	Sorghum	nucleus	35.0	31.55
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	32.5	31.52
TraesCS7B01G340700.1	Wheat	mitochondrion	30.62	31.41
TraesCS7B01G340600.1	Wheat	mitochondrion	30.62	31.41
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	26.56	31.37
TraesCS7A01G442300.1	Wheat	mitochondrion	30.94	31.23
TraesCS7A01G442100.1	Wheat	mitochondrion	30.62	31.21
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	29.69	30.94
TraesCS7B01G340500.1	Wheat	mitochondrion	30.31	30.79
TraesCS4B01G019600.1	Wheat	mitochondrion	29.69	30.65
TraesCS4A01G293700.1	Wheat	mitochondrion	29.38	30.52
HORVU7Hr1G100540.2	Barley	mitochondrion	28.44	29.93
TraesCS7A01G441900.1	Wheat	mitochondrion	29.06	29.43
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	28.75	29.3
TraesCS7D01G431200.1	Wheat	mitochondrion	27.81	28.9
HORVU6Hr1G021960.1	Barley	plastid	23.12	28.35
HORVU6Hr1G021880.1	Barley	plastid	23.12	28.35
TraesCS6D01G110700.1	Wheat	nucleus	22.81	27.76
TraesCS6A01G120700.1	Wheat	nucleus	22.5	27.38
TraesCS6B01G149100.1	Wheat	nucleus	22.19	27.0
KRH77271	Soybean	plastid	25.94	25.78
Zm00001d033419_P001	Maize	plastid	22.5	25.71
KRH57556	Soybean	nucleus	27.5	25.14
KRH51394	Soybean	nucleus	22.5	25.09
KRH60696	Soybean	nucleus, plastid	22.81	25.0
KRH04275	Soybean	nucleus	27.81	24.93
KRH28216	Soybean	nucleus	25.31	24.62
KRH69583	Soybean	nucleus	25.31	24.04
KRH74575	Soybean	cytosol	24.69	23.44
KRH24321	Soybean	cytosol	20.62	22.92
KRG94235	Soybean	cytosol	17.19	22.18
KRH29000	Soybean	cytosol	19.38	21.6
KRH15376	Soybean	nucleus, plastid	22.19	20.23
KRH05668	Soybean	nucleus	21.25	19.88

Protein Annotations

EMBL:ACUP02004693	EnsemblPlants:KRH50476	EnsemblPlantsGene:GLYMA_07G223100	EntrezGene:100801215	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12	PFAM:PF13920
PFscan:PS50089	ProteinID:KRH50476	ProteinID:KRH50476.1	SEG:seg	UniParc:UPI0002338503	UniProt:I1KMA4
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:39942546..39944120

Molecular Weight (calculated)

35536.1 Da

IEP (calculated)

6.901

GRAVY (calculated)

-0.529

Length

320 amino acids

Sequence
(BLAST)

001: MAVEAPPHNM NLFPSQLLTS REMMKPNLGF YTAQQTEGGG GAAAAMPILP SSTALPFYHQ SDSGLTCHAT TAAAPPRKRS RDSITTTESN TLLLPVPQKN
101: KLSSSPPSIL DQDLLFHFQN QQSEIDRFIA QHTEKVRMEL EEQRVRQSRM LIAAIQEAVA KKLKEKDEEI QRVGKLNWVL QERVKNLCVE NQIWKELAQT
201: NEATANNLRN NLEQVLAHVS EDHHHNLHHT TVEAAESSCA SNNNNSHHRE EEEVCGGSGN GKQSDGVLGK RMCNQCGVRE SIVLLLPCRH LCLCTMCEST
301: VRNCPLCQSG INASVHVNYS

Best Arabidopsis Sequence Match ( AT5G45100.1 )
(BLAST)

001: MAVEARHMNL FSSQYITNRE CVKSQTNMNN GQQIAGGGFP VTIGDRNLQY IDPINSFNKS ESELTAISKR QRDSTFDSDA LIASQKRRAI AFSPASLIDA
101: ELVSQIQQQN SEIDRFVAQQ TETLRIELEA RQRTQTRMLA SAVQNAILKK LKAKDEEIIR MGKLNWVLQE RVKNLYVENQ IWRDLAQTNE ATANNLRSNL
201: EQVLAQVDDL DAFRRPLVEE ADDAESSCGS CDGGDVTAVV NGGCKRCGEL TASVLVLPCR HLCLCTVCGS SALLRTCPVC DMVMTASVHV NMSS

Arabidopsis Description

BRG1BOI-related E3 ubiquitin-protein ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.