CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88927
KRH01293
KRH01295
KRH01298
KRH03466
KRH16280
KRH16605
KRH16606
KRH18814
KRH18816
KRH24006
KRH27971
KRH29310
KRH45053
KRH53180
KRH54542
KRH56919
KRH63357
KRH65380
KRH75351
KRH76167
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	KRH16605	AT1G37130.1	21798944
AT5G38640.1	KRH16606	AT1G37130.1	21798944
AT5G38640.1	KRH18814	AT1G37130.1	21798944
AT5G38640.1	KRH18816	AT1G37130.1	21798944
AT5G38640.1	KRH53180	AT1G37130.1	21798944
AT5G38640.1	KRH01293	AT1G60080.1	21798944
AT5G38640.1	KRH01295	AT1G60080.1	21798944
AT5G38640.1	KRH01298	AT1G60080.1	21798944
AT5G38640.1	KRH16280	AT1G60080.1	21798944
AT5G38640.1	KRH45053	AT1G60080.1	21798944
AT5G38640.1	KRH03466	AT3G47620.1	21798944
AT5G38640.1	KRH54542	AT3G47620.1	21798944
AT5G38640.1	KRH56919	AT3G47620.1	21798944
AT5G38640.1	KRH63357	AT3G47620.1	21798944
AT5G38640.1	KRH24006	AT3G48150.1	21798944
AT5G38640.1	KRH27971	AT3G48150.1	21798944
AT5G38640.1	KRH29310	AT3G48150.1	21798944
AT5G38640.1	KRH77487	AT3G48150.1	21798944
AT5G38640.1	KRG88927	AT4G00150.1	21798944
AT5G38640.1	KRH65380	AT4G00150.1	21798944
AT5G38640.1	KRH75351	AT4G00150.1	21798944
AT5G38640.1	KRH76167	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93828	Soybean	endoplasmic reticulum, nucleus	92.72	92.58
KRH01494	Soybean	nucleus	80.27	83.18
VIT_14s0083g00170.t01	Wine grape	cytosol	60.09	80.49
Os03t0645200-01	Rice	cytosol, plastid	18.21	80.0
Zm00001d033223_P003	Maize	cytosol	27.16	76.82
AT2G44070.1	Thale cress	cytosol	38.39	75.98
CDY49077	Canola	cytosol, plastid	54.78	70.37
PGSC0003DMT400026040	Potato	cytosol	67.53	69.86
Solyc02g089810.2.1	Tomato	nucleus	66.92	69.23
Bra028196.1-P	Field mustard	nucleus	66.16	69.21
CDX74513	Canola	nucleus	65.86	68.89
CDY01647	Canola	cytosol	65.55	68.68
AT5G38640.1	Thale cress	cytosol	65.1	66.82
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	55.08	65.64
GSMUA_Achr4P22890_001	Banana	cytosol	64.49	64.69
TraesCS5D01G384000.3	Wheat	mitochondrion	59.48	63.95
TraesCS5B01G376300.1	Wheat	mitochondrion	59.33	63.78
GSMUA_Achr7P01240_001	Banana	cytosol	62.52	63.78
KXG24018	Sorghum	mitochondrion, plastid	57.66	63.65
TraesCS5A01G374400.3	Wheat	mitochondrion	59.03	63.46
CDY27424	Canola	cytosol	11.68	63.11
Zm00001d013692_P001	Maize	cytosol	58.27	63.05
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	51.44	62.09
HORVU5Hr1G092900.2	Barley	mitochondrion	58.73	60.75
Os12t0617100-01	Rice	mitochondrion	55.54	60.3
CDY16477	Canola	mitochondrion	58.27	58.45
CDX77270	Canola	mitochondrion	58.12	58.3
Bra014165.1-P	Field mustard	mitochondrion	57.97	58.14
KRH54799	Soybean	plastid	58.57	56.6
AT1G48970.1	Thale cress	mitochondrion	56.9	56.31
EER91168	Sorghum	plastid	59.03	53.88
KRH47707	Soybean	cytosol	13.05	24.78
KRH69015	Soybean	cytosol	14.11	24.35
KRG97288	Soybean	extracellular	13.96	23.23
KRH48472	Soybean	endoplasmic reticulum	12.9	20.48
KRH39206	Soybean	cytosol	12.9	20.48
KRH30036	Soybean	cytosol	12.14	19.28

Protein Annotations

KEGG:00270+5.3.1.23	EntrezGene:100818977	MapMan:17.4.1.2.3.4	Gene3D:3.40.50.10470	EMBL:ACUP02008050	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G047500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	UniProt:I1LX09	InterPro:IF-2B-related	EnsemblPlants:KRH18264
ProteinID:KRH18264	ProteinID:KRH18264.1	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF28
MetaCyc:PWY-4361	MetaCyc:PWY-7174	SUPFAM:SSF100950	UniParc:UPI000233AC94	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:14291927..14296667

Molecular Weight (calculated)

71115.3 Da

IEP (calculated)

9.739

GRAVY (calculated)

-0.246

Length

659 amino acids

Sequence
(BLAST)

001: MDPSRRAPRA VIDPVPKIRQ VGFFAPPESS QSGPLDPTHS SPPISNSLSP VMIPPPRHLS DNLLLHDPRP AASPLSSASA VAAAGSGNSF DSADFFPAPL
101: SPAMPSSSYS SRIATGGASD GGYFKGNGAG GKLAASSFPR GGFDLTAMKA ASLVPASELT TVSVVNDSLG IPEKEKGNKT GGSAVEVKDQ PNSSKQQKPK
201: PKTSKAERRA LQEAQRAAKA AEKGEGSKAS GTAASTNPKP AKAVKPAQKV DNAAIAASEK KGGEIPPEKD RKKDAPQPRL QYDDKSRVEK AKRRAVVKQT
301: EARNRVELFR HLPQYERGSQ LPDLEAKFFH LSPVHPLVYK VGLQYLTGDI SGGNARCIAM LQAFQEAIKD YKVPPEKTLV RDLTAKIGSY VSFLIECRPL
401: SISMGNAIRF LKSRIAKLPL TLSESEAKAS LESDIECFIS EKIILANKVI VKHAVTKIRD GDVLLTFGSS SAVEMILLHA HELGRQFRVV VVDSRPKLRG
501: QLLLRRLVEN GLSCTYTHIN AVSYIMHEVT RVFLGASAVL SNGTVYSRVG TACVAMVAHA FRVPVIVCCE AYKFHERVQL DSICSNELGN PDVISNVLGR
601: EDVKHLDGWA NIENLQLLNL VYDATPSDYV SMIVTDYGMV PPTSVPVIVR EYGREQVWI

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.