Factsheet for Solyc02g089810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090950.2.1
Solyc03g113740.2.1
Solyc03g116320.2.1
Solyc06g075390.2.1
Solyc10g080130.1.1
Solyc11g013810.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	Solyc11g013810.1.1	AT1G37130.1	21798944
AT5G38640.1	Solyc06g075390.2.1	AT1G60080.1	21798944
AT5G38640.1	Solyc10g080130.1.1	AT1G60080.1	21798944
AT5G38640.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT5G38640.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT5G38640.1	Solyc01g090950.2.1	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026040	Potato	cytosol	97.02	97.02
Os03t0645200-01	Rice	cytosol, plastid	19.0	80.67
VIT_14s0083g00170.t01	Wine grape	cytosol	60.13	77.85
Zm00001d033223_P003	Maize	cytosol	27.47	75.11
AT2G44070.1	Thale cress	cytosol	39.09	74.77
CDY49077	Canola	cytosol, plastid	56.04	69.59
CDY01647	Canola	cytosol	66.72	67.57
CDX74513	Canola	nucleus	66.72	67.46
Bra028196.1-P	Field mustard	nucleus	66.72	67.46
KRH01494	Soybean	nucleus	67.35	67.45
KRG93828	Soybean	endoplasmic reticulum, nucleus	69.39	66.97
KRH18264	Soybean	cytosol	69.23	66.92
AT5G38640.1	Thale cress	cytosol	66.41	65.89
GSMUA_Achr7P01240_001	Banana	cytosol	65.15	64.24
CDY27424	Canola	cytosol	12.24	63.93
GSMUA_Achr4P22890_001	Banana	cytosol	65.78	63.77
Zm00001d013692_P001	Maize	cytosol	60.75	63.55
TraesCS5D01G384000.3	Wheat	mitochondrion	61.07	63.46
TraesCS5B01G376300.1	Wheat	mitochondrion	61.07	63.46
KXG24018	Sorghum	mitochondrion, plastid	59.18	63.15
TraesCS5A01G374400.3	Wheat	mitochondrion	60.6	62.97
Solyc12g038340.1.1	Tomato	nucleus	60.75	62.42
Os12t0617100-01	Rice	mitochondrion	57.3	60.13
HORVU5Hr1G092900.2	Barley	mitochondrion	60.13	60.13
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	51.33	59.89
CDX77270	Canola	mitochondrion	58.4	56.62
AT1G48970.1	Thale cress	mitochondrion	59.03	56.46
Bra014165.1-P	Field mustard	mitochondrion	58.08	56.32
CDY16477	Canola	mitochondrion	58.08	56.32
EER91168	Sorghum	plastid	60.91	53.74
Solyc12g049580.1.1	Tomato	nucleus	13.03	20.29
Solyc11g005600.1.1	Tomato	nucleus	12.56	19.42
Solyc09g090400.2.1	Tomato	cytosol, plastid	11.3	18.7

Protein Annotations

EnsemblPlants:Solyc02g089810.2.1	EnsemblPlantsGene:Solyc02g089810.2	Gene3D:3.40.50.10470	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related
InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23	PANTHER:PTHR10233	PANTHER:PTHR10233:SF27	PFAM:PF01008	SEG:seg
SUPFAM:SSF100950	UniParc:UPI0002768E56	UniProt:K4BCD2	MapMan:17.4.1.2.3.4	:	:

Description

No Description!

Coordinates

chr2:-:51506278..51510972

Molecular Weight (calculated)

70077.2 Da

IEP (calculated)

10.053

GRAVY (calculated)

-0.332

Length

637 amino acids

Sequence
(BLAST)

001: MDSRRVPRTV SDPKVRQVGF FAPPDRSQSG PFIPFSSSPP VSDLSPSGNS LSPVMIPPPR HLSVDVSLPR PANLHPAPLS PLRHDSIPVG SYNPSEFTSP
101: TTTNLADDNS SPGWHRRGSS GKFATSLPSA GFELPAAKQN SFTASRLTTV SNVNATLGLS DKDGKVQKER TASSKPLKEK TTKAERRALQ ESQRAAKAAA
201: KGEGTKTTTA ASENLNPIKI AKGTLQKKES PPVAAPEKKG SDRATDKDRK KDVPHPRMQF DDKSRVEKAK KRSVVKQIEA KNRVELFRHL PQYEHGTRLP
301: ELESKFFQLD PVHPAVFKVG LRYLAGDISG GNARCIAMLQ AFQESIKDYS TPAEKALIRD LTAKVNCYVS FLIECRPLSI SMGNAIRFLK TRIAKLPLTL
401: SESEAKTTLV TDIDHFISEK IILADKVIVK HAVTKISDGD VLLTYGSSSA VEMILLHAHE LGKDFRVIVV DSRPKLEGRL LLRRLVGKGV KCTYTHINAI
501: SYIMHEVTRV LLGASSVLSN GTVYSRVGTA SVAMVAHSFR VPVLICCEAY KFHERVQLNS ICSNELGDPE TIAKVPGRME INHLDGWANS DNLQLLNLIY
601: DATPSDYVSM IITDYGMIPP TSVPVIVREY RREYLWT

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.