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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • plastid 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400044316 Potato cytosol 97.14 90.12
Solyc11g005600.1.1 Tomato nucleus 69.09 64.56
GSMUA_Achr11P... Banana cytosol 53.25 64.47
KXG38620 Sorghum cytosol 66.75 61.78
TraesCS1B01G152300.1 Wheat plastid 65.97 61.5
TraesCS1D01G135300.2 Wheat plastid 65.97 61.35
TraesCS1A01G138500.3 Wheat plastid 65.71 61.11
HORVU1Hr1G035490.4 Barley plastid 65.97 61.06
Zm00001d033046_P002 Maize cytosol 65.45 60.58
Zm00001d014246_P004 Maize cytosol 66.49 57.4
Os10t0392700-02 Rice cytosol, mitochondrion, plastid 48.31 55.36
GSMUA_Achr11P... Banana cytosol 13.51 50.0
Solyc12g049580.1.1 Tomato nucleus 17.66 16.63
Solyc02g089810.2.1 Tomato nucleus 18.7 11.3
Solyc12g038340.1.1 Tomato nucleus 17.92 11.13
Protein Annotations
EnsemblPlants:Solyc09g090400.2.1EnsemblPlantsGene:Solyc09g090400.2Gene3D:3.40.50.10470GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0044237InterPro:IF-2B-related
InterPro:NagB/RpiA_transferase-likeKEGG:00270+5.3.1.23PANTHER:PTHR10233PANTHER:PTHR10233:SF9PFAM:PF01008SEG:seg
SUPFAM:SSF100950UniParc:UPI000276AD78UniProt:K4CW66MapMan:17.4.1.2.3.2::
Description
No Description!
Coordinates
chr9:+:69928002..69933713
Molecular Weight (calculated)
41570.3 Da
IEP (calculated)
5.933
GRAVY (calculated)
0.104
Length
385 amino acids
Sequence
(BLAST)
001: MPDIERLVND FVAKLSKRKV EGSQATSRLT AELLRSVVSL QRLPPTNSAA VLIEAVRGIG VKLVAANPVE LAVGNIVRRV LHIIREEDLS LLTSKTSDLD
101: LSAASDDERT IDQDYDPTQS AAAAAAKSFL RPPSLHALLE NMLDKAVPTN NYTSSSGGDT EEKSKADKLA RTRKLKHDVI EAINILIEDI DTCHELIAEQ
201: AVEHIHQNEV ILTLGSSRTA FEFLCAAKEK KRSFHVVVAE GAPRYQGHAL AKELVSRGLQ TIVVTDSAVF AMISRVNMVI VGVHAVMANG GVIAPVGMNM
301: VALAAQKHAV PFVVVAGIHK LCPSYPHNPE VCLNDMRSPA ELLEFGLFSN CMEFGMDSGA PLQVVNPGFD YVAPELVSLL ITDMA
Best Arabidopsis Sequence Match ( AT3G07300.1 )
(BLAST)
001: MPDVQSTVVE FVNKLRKRKI EGSQATAKYT VELLRSVISH QRVPHANQAA ALIDAVKAVG EQLIAANPVE LAVGNVVRRV LHIIREEDLS LTTAAMGGLD
101: LLDASDDDDV DNCKGIGFPA MSAAVVAAAA RSTLRPPSLQ TLLEGTPESA TVPYTSSSGA DSESKTADKS SLTRKLKHDV IEGVNQLIQE IAGCHEQIAE
201: QAIEHIHQNE VILTLGSSRT VLEFLCAAKE KKRSFRVFVA EGAPRYQGHL LAKELVARGL QTTVITDSAV FAMISRVNMV IIGAHAVMAN GGVIGPVGVN
301: MAALAAQKHA VPFVVLAGSH KLCPLYPHNP EVLLNELRSP SELLDFGEFS DCLDFGAGSG SLQVVNPTFD YVPPNLVSLF ITDTGGHNPS YMYRLIADYY
401: SADDLVM
Arabidopsis Description
AT3G07300 protein [Source:UniProtKB/TrEMBL;Acc:B3H7H1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.