Factsheet for Solyc12g038340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059378	Potato	cytosol, plastid	95.97	95.97
Os03t0645200-01	Rice	cytosol, plastid	17.42	72.0
Zm00001d033223_P003	Maize	cytosol	26.29	69.96
VIT_17s0000g04230.t01	Wine grape	plastid	65.81	62.87
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	55.48	62.21
Solyc02g089810.2.1	Tomato	nucleus	62.42	60.75
TraesCS5B01G376300.1	Wheat	mitochondrion	58.55	59.22
TraesCS5D01G384000.3	Wheat	mitochondrion	58.23	58.89
TraesCS5A01G374400.3	Wheat	mitochondrion	57.74	58.4
KXG24018	Sorghum	mitochondrion, plastid	55.65	57.79
GSMUA_Achr7P01240_001	Banana	cytosol	60.16	57.74
GSMUA_Achr4P22890_001	Banana	cytosol	61.13	57.69
Zm00001d013692_P001	Maize	cytosol	56.61	57.64
Os12t0617100-01	Rice	mitochondrion	55.32	56.51
HORVU5Hr1G092900.2	Barley	mitochondrion	57.26	55.73
KRH54799	Soybean	plastid	61.13	55.57
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	48.71	55.31
EER91168	Sorghum	plastid	56.77	48.75
Solyc12g049580.1.1	Tomato	nucleus	13.39	20.29
Solyc11g005600.1.1	Tomato	nucleus	13.23	19.9
Solyc09g090400.2.1	Tomato	cytosol, plastid	11.13	17.92

Protein Annotations

EnsemblPlants:Solyc12g038340.1.1	EnsemblPlantsGene:Solyc12g038340.1	Gene3D:3.40.50.10470	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related
InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23	ncoils:Coil	PANTHER:PTHR10233	PANTHER:PTHR10233:SF27	PFAM:PF01008
SEG:seg	SUPFAM:SSF100950	UniParc:UPI000276A34E	UniProt:K4DEI3	MapMan:17.4.1.2.3.4	:

Description

No Description!

Coordinates

chr12:-:48197575..48203728

Molecular Weight (calculated)

68500.2 Da

IEP (calculated)

9.500

GRAVY (calculated)

-0.352

Length

620 amino acids

Sequence
(BLAST)

001: MDTRRPSRLI DPKVRRVGFF APDPDNHPRL ASSPSGYSSS PAMISHAFDS VSQAVPVPNS TLSRPRRTSF DESEQFVVGS YNPMQSVLGT SPASSGIGVD
101: GEFSEDSSQW VRLTDGFGLT SPAKSMTELK DDQDTSSMER VSALVAETPT EVERNDKSLK EKTTKAERRA LQETQRAAKA SGKAGGKSVV KLHGQSGKPA
201: KQPPQKKDGG PMMSSAALSE TKGGDGPPEK DRKKDVPAPR MQFDDKNRVE KAKKRALVKK IEARNRVELF RHLPQYEQGT QLPDLESRFF HLDTMHPAVY
301: KVGLQYLAGD VVGANARCVA MLQAFQQAIK DYSTPREKAL GRDLTARISG YVSFLNECRP LSISMGNAIR FLKARIAKLS LTLSESEAKA ALYSDIERFM
401: NEKIALAGRV ITRQAVMKIR DGDVLLTYGS SSVVEMILLH AYELGKQFRV IVVDSRPKFE GRALLRRLVR KGLSCTYTHL NAVSYIMHEV SRVLMGAESV
501: LSNGTVYSII GTACVAMVAH AFRVPLLICC EAYKFHERVQ LDSVSSNELG NPDVISKIPG RLDVNYLDNW RSNDNIQLLN LMYDATPSDY ISMIITDYGM
601: IPTTSVPVIV HEYGSEHLLI

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.