Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G44070.1 | Thale cress | cytosol | 70.39 | 49.25 |
| VIT_14s0083g00170.t01 | Wine grape | cytosol | 81.97 | 38.82 |
| Zm00001d013692_P001 | Maize | cytosol | 90.56 | 34.65 |
| Zm00001d031081_P001 | Maize | endoplasmic reticulum, vacuole | 78.97 | 33.7 |
| CDY49077 | Canola | cytosol, plastid | 73.82 | 33.53 |
| TraesCS5D01G384000.3 | Wheat | mitochondrion | 85.41 | 32.46 |
| TraesCS5B01G376300.1 | Wheat | mitochondrion | 85.41 | 32.46 |
| TraesCS5A01G374400.3 | Wheat | mitochondrion | 84.55 | 32.14 |
| HORVU5Hr1G092900.2 | Barley | mitochondrion | 84.12 | 30.77 |
| Os03t0645200-01 | Rice | cytosol, plastid | 19.74 | 30.67 |
| KRH03820 | Soybean | cytosol, mitochondrion, nucleus, plasma membrane | 72.1 | 30.38 |
| GSMUA_Achr7P01240_001 | Banana | cytosol | 78.11 | 28.17 |
| GSMUA_Achr4P22890_001 | Banana | cytosol | 79.4 | 28.16 |
| KRH01494 | Soybean | nucleus | 76.39 | 27.99 |
| CDY27424 | Canola | cytosol | 14.59 | 27.87 |
| PGSC0003DMT400026040 | Potato | cytosol | 75.97 | 27.79 |
| Solyc02g089810.2.1 | Tomato | nucleus | 75.11 | 27.47 |
| KRG93828 | Soybean | endoplasmic reticulum, nucleus | 77.68 | 27.42 |
| CDY01647 | Canola | cytosol | 73.82 | 27.34 |
| Bra028196.1-P | Field mustard | nucleus | 73.82 | 27.3 |
| KRH18264 | Soybean | cytosol | 76.82 | 27.16 |
| CDX74513 | Canola | nucleus | 73.39 | 27.14 |
| AT5G38640.1 | Thale cress | cytosol | 73.82 | 26.79 |
| VIT_17s0000g04230.t01 | Wine grape | plastid | 74.25 | 26.66 |
| PGSC0003DMT400059378 | Potato | cytosol, plastid | 69.96 | 26.29 |
| Solyc12g038340.1.1 | Tomato | nucleus | 69.96 | 26.29 |
| CDY16477 | Canola | mitochondrion | 69.53 | 24.66 |
| CDX77270 | Canola | mitochondrion | 69.53 | 24.66 |
| Bra014165.1-P | Field mustard | mitochondrion | 69.1 | 24.51 |
| AT1G48970.1 | Thale cress | mitochondrion | 68.67 | 24.02 |
| KRH54799 | Soybean | plastid | 69.53 | 23.75 |
| Zm00001d033046_P002 | Maize | cytosol | 23.61 | 13.22 |
| Zm00001d041758_P001 | Maize | cytoskeleton, cytosol, peroxisome | 19.74 | 12.67 |
| Zm00001d014246_P004 | Maize | cytosol | 24.03 | 12.56 |
Protein Annotations
| EnsemblPlants:Zm00001d033223_P003 | EnsemblPlants:Zm00001d033223_T003 | EnsemblPlantsGene:Zm00001d033223 | Gene3D:3.40.50.10470 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0044237 | InterPro:IF-2B-related |
| InterPro:NagB/RpiA_transferase-like | KEGG:00270+5.3.1.23 | ncoils:Coil | PANTHER:PTHR10233 | PANTHER:PTHR10233:SF27 | PFAM:PF01008 |
| ProteinID:ONM07013.1 | SUPFAM:SSF100950 | UniParc:UPI0002217D97 | UniProt:A0A096SRR1 | MapMan:17.4.1.2.3.4 | : |
Description
NagB/RpiA/CoA transferase-like superfamily protein
Coordinates
chr1:+:255085629..255093358
Molecular Weight (calculated)
25819.5 Da
IEP (calculated)
9.500
GRAVY (calculated)
0.089
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPSVYKVGL QYLSGEVSGG NGRCIAMLLA FREAIKDYTT PPNKTLGRDL SAKISSYVSF LIECRPLSIS MGNAIRFLKS RIAKLAHALS ESEAKTSLQS
101: DIDRFINEKI VLADKVIVSH AITKVRDNDV LLTYGSSSIV EMILDYAHEL GRNFRVVVVD SRPKLEGQGL LQSLVGKGIS CTYTHINAIS YIMHEVTRVL
201: LGASSILSNG TVYSRVGNLG LHRLPWWHMH LEF
101: DIDRFINEKI VLADKVIVSH AITKVRDNDV LLTYGSSSIV EMILDYAHEL GRNFRVVVVD SRPKLEGQGL LQSLVGKGIS CTYTHINAIS YIMHEVTRVL
201: LGASSILSNG TVYSRVGNLG LHRLPWWHMH LEF
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
Arabidopsis Description
At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.