Factsheet for PGSC0003DMT400026040

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
ChloroP:	plastid
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400019417
PGSC0003DMT400060984
PGSC0003DMT400063189
PGSC0003DMT400066799
PGSC0003DMT400077648

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	PGSC0003DMT400077648	AT1G37130.1	21798944
AT5G38640.1	PGSC0003DMT400019417	AT1G60080.1	21798944
AT5G38640.1	PGSC0003DMT400060984	AT1G60080.1	21798944
AT5G38640.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT5G38640.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT5G38640.1	PGSC0003DMT400066799	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089810.2.1	Tomato	nucleus	97.02	97.02
Os03t0645200-01	Rice	cytosol, plastid	19.15	81.33
VIT_14s0083g00170.t01	Wine grape	cytosol	60.6	78.46
Zm00001d033223_P003	Maize	cytosol	27.79	75.97
AT2G44070.1	Thale cress	cytosol	39.4	75.38
CDY49077	Canola	cytosol, plastid	56.67	70.37
CDY01647	Canola	cytosol	67.5	68.36
CDX74513	Canola	nucleus	67.5	68.25
Bra028196.1-P	Field mustard	nucleus	67.5	68.25
KRH01494	Soybean	nucleus	67.82	67.92
KRH18264	Soybean	cytosol	69.86	67.53
AT5G38640.1	Thale cress	cytosol	67.5	66.98
KRG93828	Soybean	endoplasmic reticulum, nucleus	69.39	66.97
CDY27424	Canola	cytosol	12.4	64.75
GSMUA_Achr7P01240_001	Banana	cytosol	65.46	64.55
Zm00001d013692_P001	Maize	cytosol	61.22	64.04
TraesCS5D01G384000.3	Wheat	mitochondrion	61.38	63.78
TraesCS5B01G376300.1	Wheat	mitochondrion	61.38	63.78
GSMUA_Achr4P22890_001	Banana	cytosol	65.78	63.77
TraesCS5A01G374400.3	Wheat	mitochondrion	60.91	63.3
PGSC0003DMT400059378	Potato	cytosol, plastid	61.54	63.23
KXG24018	Sorghum	mitochondrion, plastid	59.18	63.15
Os12t0617100-01	Rice	mitochondrion	57.77	60.63
HORVU5Hr1G092900.2	Barley	mitochondrion	60.44	60.44
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	51.65	60.26
CDX77270	Canola	mitochondrion	58.87	57.08
AT1G48970.1	Thale cress	mitochondrion	59.5	56.91
Bra014165.1-P	Field mustard	mitochondrion	58.56	56.77
CDY16477	Canola	mitochondrion	58.56	56.77
EER91168	Sorghum	plastid	61.54	54.29
PGSC0003DMT400074245	Potato	cytosol	14.13	22.56
PGSC0003DMT400044316	Potato	cytosol	12.24	18.8

Protein Annotations

EnsemblPlants:PGSC0003DMT400026040	EnsemblPlantsGene:PGSC0003DMG401010047	EntrezGene:102583562	Gene3D:3.40.50.10470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23	PANTHER:PTHR10233
PANTHER:PTHR10233:SF27	PFAM:PF01008	PGSC:PGSC0003DMG401010047	RefSeq:XP_006338280.1	SEG:seg	SUPFAM:SSF100950
UniParc:UPI00029615E2	UniProt:M1AMJ1	MapMan:17.4.1.2.3.4	:	:	:

Description

Translation initiation factor 2b, delta subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401010047]

Coordinates

chr2:+:44910329..44915911

Molecular Weight (calculated)

70180.4 Da

IEP (calculated)

9.995

GRAVY (calculated)

-0.345

Length

637 amino acids

Sequence
(BLAST)

001: MDSRRVPRTV SDPKVRQVGF FAPPDRSQLG PFIPFSSSPP VSDLSPSGNS LSPVMIPPPR HLSVDVSLPR PGNLYPAPLS PLRRDSIPVG SYNPSEFSSP
101: TTTNLPDDTS SPGWHRRGSS GKFATSLPSA GFELPAAKQN SFTASRLTTV SNVNAPLGLS DKDGEVQKER TASSKPLKEK TTKAERRALQ EAQRAAKAAS
201: KGEGTKTTTA ASENLNPVKI AKGTLQKKES PPVAAPEKKG SDRATDKDRK KDVPHPRMQF DDKSRVEKAK KRSVVKQTEA KNRVELFRHL PQYEHGTRLP
301: ELESKFFQLD PVHPAVFKVG LRYLAGDISG GNARCIAMLQ ALQESIKDYS TPPEKVLIRD LTAKVNCYVS FLIECRPLSI SMGNAIRFLK TRIAKLPLTL
401: SESEAKTTLV TDIDHFISEK IILADKVIVK HAVTKIRDGD VLLTYGSSSA VEMILLHAHE LGKDFRVVVV DSRPKLEGRL LLRRLVGKGV KCTYTHINAI
501: SYIMHEVTRV LLGASSVLSN GTVYSRVGTA SVAMVAHSFR VPVLICCEAY KFHERVQLDS ICSNELGDPE TIAKVPGRME INHLDGWANS DNLQLLNLIY
601: DATPSDYVSM IITDYGMIPP TSVPVIVREY RREYLWT

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.