CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87695
EER88112
EER88427
EER91968
EES03295
EES05768
EES07255
EES07517
EES07601
EES11245
EES13985
EES15299
KXG22639
KXG29961
OQU85223
OQU85680

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	EER88427	AT1G01440.1	21798944
AT5G38640.1	EES03295	AT1G01440.1	21798944
AT5G38640.1	KXG22639	AT1G01440.1	21798944
AT5G38640.1	KXG29961	AT1G01440.1	21798944
AT5G38640.1	EES07601	AT1G37130.1	21798944
AT5G38640.1	EES13985	AT1G37130.1	21798944
AT5G38640.1	OQU85223	AT1G37130.1	21798944
AT5G38640.1	EES15299	AT1G60080.1	21798944
AT5G38640.1	EER88112	AT3G47620.1	21798944
AT5G38640.1	EES07255	AT3G47620.1	21798944
AT5G38640.1	EES07517	AT3G48150.1	21798944
AT5G38640.1	EER87695	AT4G00150.1	21798944
AT5G38640.1	EER91968	AT4G00150.1	21798944
AT5G38640.1	EES05768	AT4G00150.1	21798944
AT5G38640.1	EES11245	AT4G00150.1	21798944
AT5G38640.1	OQU85680	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	77.72	84.98
Os12t0617100-01	Rice	mitochondrion	75.04	73.81
VIT_14s0083g00170.t01	Wine grape	cytosol	60.47	73.37
AT2G44070.1	Thale cress	cytosol	40.87	73.27
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	57.29	61.84
CDY27424	Canola	cytosol	12.56	61.48
CDY49077	Canola	cytosol, plastid	52.6	61.21
GSMUA_Achr4P22890_001	Banana	cytosol	67.17	61.03
GSMUA_Achr7P01240_001	Banana	cytosol	65.16	60.22
KRH01494	Soybean	nucleus	63.48	59.59
KRG93828	Soybean	endoplasmic reticulum, nucleus	65.66	59.39
Bra028196.1-P	Field mustard	nucleus	62.65	59.37
CDX74513	Canola	nucleus	62.48	59.21
PGSC0003DMT400026040	Potato	cytosol	63.15	59.18
Solyc02g089810.2.1	Tomato	nucleus	63.15	59.18
CDY01647	Canola	cytosol	62.14	58.98
AT5G38640.1	Thale cress	cytosol	62.81	58.41
VIT_17s0000g04230.t01	Wine grape	plastid	63.48	58.4
KRH18264	Soybean	cytosol	63.65	57.66
PGSC0003DMT400059378	Potato	cytosol, plastid	59.63	57.42
EER91168	Sorghum	plastid	68.17	56.37
Solyc12g038340.1.1	Tomato	nucleus	57.79	55.65
CDX77270	Canola	mitochondrion	57.12	51.9
CDY16477	Canola	mitochondrion	56.78	51.6
Bra014165.1-P	Field mustard	mitochondrion	56.78	51.6
KRH54799	Soybean	plastid	57.62	50.44
AT1G48970.1	Thale cress	mitochondrion	55.44	49.7
OQU79155	Sorghum	cytosol	15.58	25.41
KXG38620	Sorghum	cytosol	14.07	20.19

Protein Annotations

KEGG:00270+5.3.1.23	MapMan:17.4.1.2.3.4	Gene3D:3.40.50.10470	EntrezGene:8084422	UniProt:C5YSD0	ProteinID:EES17412.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	EnsemblPlants:KXG24018	ProteinID:KXG24018	ProteinID:KXG24018.1
InterPro:NagB/RpiA_transferase-like	ProteinID:OQU79632.1	ProteinID:OQU79633.1	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF29
MetaCyc:PWY-4361	MetaCyc:PWY-7174	EnsemblPlantsGene:SORBI_3008G173400	SUPFAM:SSF100950	unigene:Sbi.10288	UniParc:UPI0001A8814A
RefSeq:XP_002443574.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:60699790..60709024

Molecular Weight (calculated)

65627.8 Da

IEP (calculated)

8.859

GRAVY (calculated)

-0.281

Length

597 amino acids

Sequence
(BLAST)

001: MDIRRAPPSR AASGGVEPRF RQVGFVTAAE PARGPVAPAA ASPTASDGLS PVMIPPPLIP APAPASESLM PSSPPPASSY LLEVVSDLDD YADDDDIDVS
101: WARPPPPALP EANKRDLTET KNEHAPTPVS QKPKLSKAER RAIQESQRAA KAAAKEAGLK PTAMASDAST KISKQPKTAK TSLKKDVNQV NPPVATDKKT
201: GERPPDKDRK KDVPQPRMQF DDAHRVVKAK KRSVVNQSEA RNRVELFRHL PQYAHGTQLP DLESKFLQPD LMHPSVYKVG LQYLSGDISG GNARCIAMLL
301: AFREAINDYS TPAEKILNRD LTAKISSYVS FLIDCRPLSI SMGNAIRFLK NRITKLPLAL SESEAKVSLQ SDIDRFINEK IIVADKVIVS HAVTKIRDDD
401: VLLTFGSASV VEMIFDHAHE LGKKFRVVVV DSRPNHEGQI LLRQLVAKGI SCTYTHINAV SYIMHEVTRV FLGASSVLSN GTVYSRVGTA LVAMVAHAFG
501: VPVLVCCEAY KFHERVQLDS ICFNELGDPD AISRVPRDAS LSHLKNWAEN ENLHLLNLKY DITPSDYVSM LITDYGMLPP TSVPVIVREY RREHVWI

Best Arabidopsis Sequence Match ( AT1G48970.1 )
(BLAST)

001: MDTRRGALAV PKVRRVGFFT SIEPPPESSL QRPNRSQSGP VDATTSSSPL SDSPSGNLIS PVLIPPSRHH SDNLTSRVAA AAAAPVPVPG PAAFRRYLTP
101: ERTLLHVGSY NPPDSLLGTS SPSSNGGLSE DSASLFGFQR SDSTKLSASL PNGGFDLTLA VRAPQESETK IATTSASQGK KKIAEVSGKS ESATTKPQKE
201: KEPKALKDKT TKAERRAIQE AQRAAKAAAK GEGSRRADES GRANPGKAAI KPQPKKERLP VTSSVSEKTA VAVEKEKRMD VPQTQMQYDD KSRVDKAKRR
301: AVVEQTESKN KVELFLHLPQ YERSNQLPNL SSNFFTLDSI HHAVYKVGLQ HLAGDISGDN ARCIAMLQAF QEAIEDYSTP PMKDLTMDLT AKINGYVSFL
401: IECRPLSMSM GNAIRFLKNQ IRKLPVNLSE SEAKSSLCSD IGRFIDEKTI IADKAIVQHA VTKIRDGEVL LTYGFSCVVE MILLYAHEIG KKFRVVIVDS
501: RPNLEGQKLL RRLVTRGLDC TYTHINAISY IMREATRVFL GASSIYSNGT LYARVGTSCI AMVANAFSVP VIVCCEAYKF HERVLLDSIC SNELGDPDAV
601: ANIPSFRTNA KHSKTMDNNK NLQFLNLMYD STPSEYISMI VSDYGMIPPT SIPVIVREYR RENLLL

Arabidopsis Description

NagB/RpiA/CoA transferase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I048]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.