CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87695
EER88112
EER88427
EER91968
EES03295
EES05768
EES07255
EES07517
EES07601
EES11245
EES13985
EES15299
KXG22639
KXG29961
OQU85223
OQU85680

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	EER88427	AT1G01440.1	21798944
AT5G38640.1	EES03295	AT1G01440.1	21798944
AT5G38640.1	KXG22639	AT1G01440.1	21798944
AT5G38640.1	KXG29961	AT1G01440.1	21798944
AT5G38640.1	EES07601	AT1G37130.1	21798944
AT5G38640.1	EES13985	AT1G37130.1	21798944
AT5G38640.1	OQU85223	AT1G37130.1	21798944
AT5G38640.1	EES15299	AT1G60080.1	21798944
AT5G38640.1	EER88112	AT3G47620.1	21798944
AT5G38640.1	EES07255	AT3G47620.1	21798944
AT5G38640.1	EES07517	AT3G48150.1	21798944
AT5G38640.1	EER87695	AT4G00150.1	21798944
AT5G38640.1	EER91968	AT4G00150.1	21798944
AT5G38640.1	EES05768	AT4G00150.1	21798944
AT5G38640.1	EES11245	AT4G00150.1	21798944
AT5G38640.1	OQU85680	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013692_P001	Maize	cytosol	79.92	94.75
Os03t0645200-01	Rice	cytosol, plastid	19.39	93.33
TraesCS5D01G384000.3	Wheat	mitochondrion	71.47	84.18
TraesCS5B01G376300.1	Wheat	mitochondrion	71.05	83.69
TraesCS5A01G374400.3	Wheat	mitochondrion	70.64	83.2
HORVU5Hr1G092900.2	Barley	mitochondrion	71.61	81.16
VIT_14s0083g00170.t01	Wine grape	cytosol	50.42	73.98
AT2G44070.1	Thale cress	cytosol	33.66	72.97
KXG24018	Sorghum	mitochondrion, plastid	56.37	68.17
GSMUA_Achr4P22890_001	Banana	cytosol	59.14	64.99
GSMUA_Achr7P01240_001	Banana	cytosol	57.2	63.93
CDY49077	Canola	cytosol, plastid	44.6	62.77
PGSC0003DMT400026040	Potato	cytosol	54.29	61.54
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	47.09	61.48
Solyc02g089810.2.1	Tomato	nucleus	53.74	60.91
CDY01647	Canola	cytosol	52.49	60.25
KRH01494	Soybean	nucleus	53.05	60.22
CDX74513	Canola	nucleus	52.22	59.84
Bra028196.1-P	Field mustard	nucleus	52.08	59.68
AT5G38640.1	Thale cress	cytosol	52.77	59.35
VIT_17s0000g04230.t01	Wine grape	plastid	53.32	59.32
KRG93828	Soybean	endoplasmic reticulum, nucleus	54.16	59.24
KRH18264	Soybean	cytosol	53.88	59.03
PGSC0003DMT400059378	Potato	cytosol, plastid	49.31	57.42
Solyc12g038340.1.1	Tomato	nucleus	48.75	56.77
CDY27424	Canola	cytosol	9.14	54.1
KRH54799	Soybean	plastid	49.86	52.79
CDY16477	Canola	mitochondrion	47.78	52.51
CDX77270	Canola	mitochondrion	47.78	52.51
Bra014165.1-P	Field mustard	mitochondrion	47.65	52.36
AT1G48970.1	Thale cress	mitochondrion	46.54	50.45
OQU79155	Sorghum	cytosol	12.74	25.14
KXG38620	Sorghum	cytosol	11.77	20.43

Protein Annotations

EnsemblPlants:EER91168	EnsemblPlantsGene:SORBI_3001G155400	Gene3D:3.40.50.10470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23	MetaCyc:PWY-4361	MetaCyc:PWY-7174
ncoils:Coil	PANTHER:PTHR10233	PANTHER:PTHR10233:SF29	PFAM:PF01008	ProteinID:EER91168	ProteinID:EER91168.2
SEG:seg	SUPFAM:SSF100950	UniParc:UPI00081AC700	UniProt:C5WR65	MapMan:17.4.1.2.3.4	:

Description

hypothetical protein

Coordinates

chr1:+:12586392..12592117

Molecular Weight (calculated)

78485.9 Da

IEP (calculated)

10.182

GRAVY (calculated)

-0.422

Length

722 amino acids

Sequence
(BLAST)

001: MQSSARPNYS TSLSGPPEHL RPLLVLGKNP KMNRPPQTTP TNAHDPGSRR ARQSPSPRLH PVHHHRACSA AAATARIPHP LARSLARLTH SSSGVERRPQ
101: TPNQTLGAGQ AIMDLRRPPR SSSGGVEPKI RQVGFFTPDA SAPSEPLPPA AAAAPAPSAQ QRPAAGSPPA SDDLSTGRLS PVMIPPPRHA DHLAPGPPSP
201: AAADVVLATS APVRSSPRLD VASEIGDDDS WSRAPSAVEL EENKRGLAEI QNKGAPASIP QKQKTSKAER RAIQEAQRAA KAAAKEADKS GKSAGAAMSK
301: QAKSAKTAQK KDVPQAASTV ASEKKATERP PERERKLDAP HPRMQFDDVH KVEKAKKRAV VNQSEARNRV ELFRHLPQYV HGTQLPDLEA KFFQLEPMHP
401: SVYKVGLQYL SSEVSGGNGR CIAMLLAFKE AIKDYTTPPN KTLSRDLTAK ISSYVSFLIE CRPLSISMGN AIRFLKSRIA KLPHALSESE AKTRLQSDID
501: RFINEKIVLA DKAIVSHAIT KVRDNDVLLT YGSSSVVEMI LEYAHELGRN FRVVVVDSRP KLEGQGLLRR LVAKGINCTY THINAISYIM HEVTRVLLGA
601: SSILSNGTVY SRVGTASVAM VAHAFGVPVL VCCEAYKFHE RVQLDSICAN ELGDPDVILK IPGRAEDHLK NWADNANLQL LNLTYDATPP DYVSMIITDY
701: GMLPPTSVPV IVREYRKEQL WI

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.