CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	95.36	96.14
TraesCS5A01G109200.2	Wheat	cytosol	93.17	94.2
HORVU5Hr1G038720.1	Barley	cytosol	93.17	94.2
TraesCS5D01G121400.1	Wheat	cytosol	92.62	93.65
Os12t0497400-01	Rice	cytosol	93.99	90.53
TraesCS5B01G113900.1	Wheat	cytosol	82.79	87.07
GSMUA_Achr11P...	Banana	cytosol	65.57	86.64
Bra041170.1-P	Field mustard	cytosol, mitochondrion	15.85	79.45
Bra008029.1-P	Field mustard	cytosol	74.04	76.99
KRH47707	Soybean	cytosol	71.58	75.5
KRH69015	Soybean	cytosol	76.5	73.3
CDY03642	Canola	mitochondrion	74.04	73.24
CDX82154	Canola	mitochondrion	74.04	72.46
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	77.05	71.57
CDX72907	Canola	cytosol	74.32	70.65
CDX96399	Canola	cytosol	74.04	70.21
KRG97288	Soybean	extracellular	75.96	70.2
PGSC0003DMT400074245	Potato	cytosol	76.5	70.18
AT1G53880.1	Thale cress	cytosol	73.77	70.13
Bra039699.1-P	Field mustard	cytosol	71.86	68.67
CDY36614	Canola	cytosol	72.4	68.65
CDY24066	Canola	cytosol	72.13	68.57
Solyc12g049580.1.1	Tomato	nucleus	75.14	67.24
AT1G72340.2	Thale cress	cytosol, plastid	74.04	66.26
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	76.5	48.36
AT1G53900.2	Thale cress	mitochondrion	73.77	44.7
KXG38620	Sorghum	cytosol	19.13	16.83
KXG24018	Sorghum	mitochondrion, plastid	25.41	15.58
EER91168	Sorghum	plastid	25.14	12.74

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	EntrezGene:8063291	UniProt:A0A1Z5R6U1
ncoils:Coil	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related
InterPro:NagB/RpiA_transferase-like	EnsemblPlants:OQU79155	ProteinID:OQU79155	ProteinID:OQU79155.1	PFAM:PF01008	PANTHER:PTHR10233
PANTHER:PTHR10233:SF18	EnsemblPlantsGene:SORBI_3008G101600	SUPFAM:SSF100950	UniParc:UPI0001A88460	RefSeq:XP_002443208.1	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:48258331..48261777

Molecular Weight (calculated)

39647.7 Da

IEP (calculated)

5.433

GRAVY (calculated)

0.046

Length

366 amino acids

Sequence
(BLAST)

001: MEPDAAQNPS PVPPPISAYY QTRAEHHAVV SSDWLAHAAA AAAAFPGADA ADAAAQPPTP SSPGAAGGVI EEFNFWRRKP EAAEAVAAIM ALAAVIRSSR
101: ATTMMELEIE LKKASDKLKS WDATSISLSA ACDLFMRFVT RTSHLEHEKF DAAKSRLIER GEKFGEISLK ARKTIAMLSQ DFIYDGCTIL VHGYSRVVLE
201: VLKLAASNRK LFRVLCTEGR PDRTGLRMSN ELAALGIPVK VLIDSAVAYS MDEVDMVFVG ADGVVESGGI INMMGTYQIA LVAHSMNKPV YVAAESYKFA
301: RLYPLDQKDM TPAHRPIDFG VPVPTGVEVE TSARDYTPPQ YLTLLLTDLG VLTPSVVSDE LIQLYL

Best Arabidopsis Sequence Match ( AT1G72340.2 )
(BLAST)

001: MIFLEKATVY YLQFFHFEEF SQEKKKSMWR RSPSFILDER RSSNSPPMAD TTRGPFQNPD SISAYYQTRA AHHGVITSDW LAQAQAAVGG VSGDAQHDLS
101: VTDLGNEKSF NVIEEFNNWR KQPDLAEAVA AIRALAAVIR ASEASTMMEL EIELKKASDT LKSWDKTSIS LTAGCDLFIR YVTRTSALEY EDFNSAKSRL
201: LERAEKFGEI SCKARRIIAM LSQDFIFDGC TILVHGLSRV VLEILKTAAQ NNKLFRVLCT EGRPDGTGVL LSSELSKLDI PVKLLLDSAV AYSMDEVDMV
301: FVGADGVVES GGIINMMGTY QIALVAHSMN KPVYVAAESY KFARLYPLDQ KDMAPALRPI EFGVKIPTKV EVERSARDYT PPQYLTLLFT DLGVLSPSVV
401: SDELIQLYL

Arabidopsis Description

NagB/RpiA/CoA transferase-like superfamily protein [Source:TAIR;Acc:AT1G72340]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.