Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53880.1 | GSMUA_Achr1P22740_001 | AT5G35750.1 | 18642946 |
| AT1G53880.1 | GSMUA_Achr4P17470_001 | AT5G35750.1 | 18642946 |
| AT1G53880.1 | GSMUA_AchrUn_... | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra041170.1-P | Field mustard | cytosol, mitochondrion | 21.66 | 82.19 |
| KRH47707 | Soybean | cytosol | 83.03 | 66.28 |
| TraesCS5A01G109200.2 | Wheat | cytosol | 86.28 | 66.02 |
| TraesCS5D01G121400.1 | Wheat | cytosol | 86.28 | 66.02 |
| Bra008029.1-P | Field mustard | cytosol | 83.75 | 65.91 |
| HORVU5Hr1G038720.1 | Barley | cytosol | 85.92 | 65.75 |
| OQU79155 | Sorghum | cytosol | 86.64 | 65.57 |
| Zm00001d041758_P001 | Maize | cytoskeleton, cytosol, peroxisome | 85.92 | 65.56 |
| GSMUA_Achr8P16800_001 | Banana | mitochondrion, plastid | 92.78 | 65.23 |
| Os12t0497400-01 | Rice | cytosol | 87.36 | 63.68 |
| KRH69015 | Soybean | cytosol | 87.0 | 63.09 |
| CDY03642 | Canola | mitochondrion | 83.75 | 62.7 |
| CDX82154 | Canola | mitochondrion | 83.39 | 61.76 |
| KRG97288 | Soybean | extracellular | 87.0 | 60.86 |
| TraesCS5B01G113900.1 | Wheat | cytosol | 75.81 | 60.34 |
| Bra039699.1-P | Field mustard | cytosol | 83.39 | 60.31 |
| AT1G53880.1 | Thale cress | cytosol | 83.75 | 60.26 |
| CDY36614 | Canola | cytosol | 83.75 | 60.1 |
| CDY24066 | Canola | cytosol | 83.39 | 60.0 |
| CDX96399 | Canola | cytosol | 83.39 | 59.84 |
| CDX72907 | Canola | cytosol | 83.03 | 59.74 |
| PGSC0003DMT400074245 | Potato | cytosol | 84.84 | 58.9 |
| Solyc12g049580.1.1 | Tomato | nucleus | 84.12 | 56.97 |
| AT1G72340.2 | Thale cress | cytosol, plastid | 83.39 | 56.48 |
| VIT_09s0002g00390.t01 | Wine grape | mitochondrion, plastid | 86.28 | 41.28 |
| AT1G53900.2 | Thale cress | mitochondrion | 83.75 | 38.41 |
| GSMUA_Achr11P... | Banana | cytosol | 24.91 | 21.7 |
| GSMUA_Achr7P01240_001 | Banana | cytosol | 25.63 | 10.99 |
| GSMUA_Achr4P22890_001 | Banana | cytosol | 25.99 | 10.96 |
| GSMUA_Achr11P... | Banana | cytosol | 3.25 | 8.65 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P09220_001 | EnsemblPlants:GSMUA_Achr11T09220_001 | EnsemblPlantsGene:GSMUA_Achr11G09220_001 | Gene3D:1.20.120.1070 | Gene3D:3.40.50.10470 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0044237 | InterPro:IF-2B-related | InterPro:NagB/RpiA_transferase-like | KEGG:00270+5.3.1.23 |
| ncoils:Coil | PANTHER:PTHR10233 | PANTHER:PTHR10233:SF18 | PFAM:PF01008 | SUPFAM:SSF100950 | UniParc:UPI0002954C48 |
| UniProt:M0RQQ2 | MapMan:17.4.1.2.3.1 | : | : | : | : |
Description
Putative Translation initiation factor eIF-2B subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr11G09220_001]
Coordinates
chr11:+:7121931..7126258
Molecular Weight (calculated)
30517.3 Da
IEP (calculated)
5.040
GRAVY (calculated)
0.199
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVAGIRSS DATTMMELEI ELKKASDALK SWDTTSISLS AGCDLFMRYV TRTSALEYDD FHAAKLRLIE RGEKFGEISL KARRTIAMLG QDFIFDGCTI
101: LVHGFSRVVL EVLKLAASNR KLFRVFCTEG RPDKTGLRLS KELATLGIPV KLLIDSAVAY AMDEVDMVLV GADGVVESGG VINMMGTYQT ALVAHSMNKP
201: VYVAAESYKF ARLYPLDQKD LEPALRLIEF GVPIPAGVEI EKSARDYTPP QYLTLLFTDL GVLTPSVVSD ELIQLYL
101: LVHGFSRVVL EVLKLAASNR KLFRVFCTEG RPDKTGLRLS KELATLGIPV KLLIDSAVAY AMDEVDMVLV GADGVVESGG VINMMGTYQT ALVAHSMNKP
201: VYVAAESYKF ARLYPLDQKD LEPALRLIEF GVPIPAGVEI EKSARDYTPP QYLTLLFTDL GVLTPSVVSD ELIQLYL
001: MWRESASFIL DKHQNNKPIS LTHSIDSPPP PSASMADENP NPNPISAYYQ TRAAHHGIVT SEWLEQAQAA VRRYPDRDSL VSGRPFSVIE DFNSWRQQPD
101: LAEAVAAIRA LAAVIRASEA TTMMELEIEL KKASDTLKSW DTTSISLTAG CDLFMRYVTR TSALEFEDFN SAKSRVLERA EKFGEISCKA RTIIAMLSQD
201: FIFDGCTILV HGFSRVVFEI LKTSAQNKKL FRVLCTEGRP DKTGVLLANE LAKLDIPVKL LIDSAVAYSM DEVDMVFVGA DGVVESGGII NMMGTYQIAL
301: VAQSMNKPVY VAAESYKFAR LYPLDQKDLE PALRPIDFSV PVPPKVEVER SARDYTPPQY LTLLFTDLGV LTPSVVSDEL IQLYL
101: LAEAVAAIRA LAAVIRASEA TTMMELEIEL KKASDTLKSW DTTSISLTAG CDLFMRYVTR TSALEFEDFN SAKSRVLERA EKFGEISCKA RTIIAMLSQD
201: FIFDGCTILV HGFSRVVFEI LKTSAQNKKL FRVLCTEGRP DKTGVLLANE LAKLDIPVKL LIDSAVAYSM DEVDMVFVGA DGVVESGGII NMMGTYQIAL
301: VAQSMNKPVY VAAESYKFAR LYPLDQKDLE PALRPIDFSV PVPPKVEVER SARDYTPPQY LTLLFTDLGV LTPSVVSDEL IQLYL
Arabidopsis Description
Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53880]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.