Factsheet for Bra039699.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53880.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24066	Canola	cytosol	99.48	98.96
AT1G53880.1	Thale cress	cytosol	89.03	88.57
GSMUA_Achr11P...	Banana	cytosol	60.31	83.39
Bra008029.1-P	Field mustard	cytosol	74.93	81.53
Bra041170.1-P	Field mustard	cytosol, mitochondrion	15.14	79.45
KRH47707	Soybean	cytosol	71.54	78.96
KRH69015	Soybean	cytosol	78.33	78.53
PGSC0003DMT400074245	Potato	cytosol	79.63	76.44
KRG97288	Soybean	extracellular	77.02	74.49
Solyc12g049580.1.1	Tomato	nucleus	78.85	73.84
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	75.72	73.6
TraesCS5D01G121400.1	Wheat	cytosol	68.41	72.38
TraesCS5A01G109200.2	Wheat	cytosol	68.41	72.38
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	68.41	72.18
HORVU5Hr1G038720.1	Barley	cytosol	68.15	72.1
OQU79155	Sorghum	cytosol	68.67	71.86
Os12t0497400-01	Rice	cytosol	69.45	70.0
TraesCS5B01G113900.1	Wheat	cytosol	62.4	68.68
AT1G53900.2	Thale cress	mitochondrion	89.03	56.46
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	80.16	53.02
Bra040371.1-P	Field mustard	cytosol	20.89	20.25
Bra028196.1-P	Field mustard	nucleus	23.5	14.29
Bra014165.1-P	Field mustard	mitochondrion	23.5	13.7
Bra029637.1-P	Field mustard	cytosol	21.15	10.66

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	EnsemblPlantsGene:Bra039699	EnsemblPlants:Bra039699.1
EnsemblPlants:Bra039699.1-P	ncoils:Coil	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0044237
InterPro:IF-2B-related	UniProt:M4FF27	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18
SUPFAM:SSF100950	UniParc:UPI000253E775	SEG:seg	:	:	:

Description

AT1G53880 (E=3e-176) | GTP binding / translation initiation factor

Coordinates

chrA06:-:484622..486891

Molecular Weight (calculated)

42648.5 Da

IEP (calculated)

6.272

GRAVY (calculated)

-0.045

Length

383 amino acids

Sequence
(BLAST)

001: MWRRSASFVL DKHHNNKPIS LTPSLDSMAE VNPNPNPNPN PISAYYQTRA KHHGIVTSDW LEQAQAAVVR YPDKDSPVAG RRPFSVIVEF DSWRQQPDLA
101: EAVAAVRALA AVIRASEATT MMELEIELKK ASDTLKSWDT TSISLTAGCD LFMRYVTRTS ALEFEDFNAA KARVLGRAEK FGEISYKARK IIAVLSQDFI
201: FDWCTILVHG FSRVVLEILK TAAQNKKLFR VLCTEGRPDK TGVLLAKELA KLDVPVKLLI DSAVAYSMDE VDMVIFGADG VVESGGVINM MGTYQIALVA
301: HTMNKPVYVA AESYKFARLY PLDQKDLEPA LRPVDFGVPV PPKVEVERSA RDYTPPQYLT MLFTDLGVLT PSVVSDELIQ LYL

Best Arabidopsis Sequence Match ( AT1G53900.2 )
(BLAST)

001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL

Arabidopsis Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53900]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.