Factsheet for GSMUA_Achr8P16800_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22740_001
GSMUA_Achr4P17470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53880.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT1G53880.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT1G53880.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	65.23	92.78
Bra041170.1-P	Field mustard	cytosol, mitochondrion	14.97	80.82
Bra008029.1-P	Field mustard	cytosol	70.56	78.98
KRH69015	Soybean	cytosol	76.4	78.8
CDY03642	Canola	mitochondrion	73.86	78.65
KRH47707	Soybean	cytosol	68.53	77.81
CDX82154	Canola	mitochondrion	73.86	77.81
TraesCS5A01G109200.2	Wheat	cytosol	71.32	77.62
TraesCS5D01G121400.1	Wheat	cytosol	71.32	77.62
HORVU5Hr1G038720.1	Barley	cytosol	70.81	77.07
OQU79155	Sorghum	cytosol	71.57	77.05
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	70.81	76.86
AT1G53880.1	Thale cress	cytosol	74.62	76.36
CDY36614	Canola	cytosol	74.62	76.17
Os12t0497400-01	Rice	cytosol	73.35	76.05
Bra039699.1-P	Field mustard	cytosol	73.6	75.72
CDY24066	Canola	cytosol	73.6	75.32
KRG97288	Soybean	extracellular	75.63	75.25
PGSC0003DMT400074245	Potato	cytosol	76.14	75.19
CDX72907	Canola	cytosol	73.35	75.06
CDX96399	Canola	cytosol	73.1	74.61
TraesCS5B01G113900.1	Wheat	cytosol	63.96	72.41
Solyc12g049580.1.1	Tomato	nucleus	75.13	72.37
AT1G72340.2	Thale cress	cytosol, plastid	73.86	71.15
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	78.43	53.37
AT1G53900.2	Thale cress	mitochondrion	74.62	48.68
GSMUA_Achr11P...	Banana	cytosol	17.01	21.07
GSMUA_Achr4P22890_001	Banana	cytosol	22.84	13.7
GSMUA_Achr7P01240_001	Banana	cytosol	22.08	13.47
GSMUA_Achr11P...	Banana	cytosol	3.05	11.54

Protein Annotations

EnsemblPlants:GSMUA_Achr8P16800_001	EnsemblPlants:GSMUA_Achr8T16800_001	EnsemblPlantsGene:GSMUA_Achr8G16800_001	Gene3D:1.20.120.1070	Gene3D:3.40.50.10470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23
ncoils:Coil	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18	PFAM:PF01008	SEG:seg	SUPFAM:SSF100950
UniParc:UPI0002960465	UniProt:M0TR33	MapMan:17.4.1.2.3.1	:	:	:

Description

Putative Translation initiation factor eIF-2B subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr8G16800_001]

Coordinates

chr8:-:14877163..14882415

Molecular Weight (calculated)

43387.0 Da

IEP (calculated)

5.155

GRAVY (calculated)

-0.035

Length

394 amino acids

Sequence
(BLAST)

001: MWGRSASFLL DKRLRDQHPS LSSPSSSSPD STMDPNPNPN HGVSAYYQTR AEHHAIVSSD WLAQAQAAVD REDDTALMER PHASAAVSLS ASKPFSVIDE
101: FNYWRKKPDL AEAVAAIMAL AAVIRSCEAT TMMELEIELK KASDTLKSWD TTSISLSAGC DLFMRYVTRT SAVEYEDFHA AKLRLIERGE KFGEISMKAR
201: RTIAMLGQDF VFDGCTILVH GFSRVVLEVL KLAASNRKLF RIFCTEGRPD KTGLRLSKEL AALGVPVKLL IDSAVAYAMD EVDMVFVGAD GVVESGGIIN
301: MMGTYQTALV AHSMNKPVYV AAESYKFARL YPLDQKDLEP ALHPIDFGVP IPSGVEVETS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI QLYL

Best Arabidopsis Sequence Match ( AT1G53900.2 )
(BLAST)

001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL

Arabidopsis Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53900]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.