Factsheet for Os12t0497400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0362300-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53880.1	Os10t0362300-03	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G109200.2	Wheat	cytosol	92.11	96.69
TraesCS5D01G121400.1	Wheat	cytosol	91.84	96.41
HORVU5Hr1G038720.1	Barley	cytosol	91.58	96.13
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	90.26	94.49
OQU79155	Sorghum	cytosol	90.53	93.99
TraesCS5B01G113900.1	Wheat	cytosol	82.11	89.66
GSMUA_Achr11P...	Banana	cytosol	63.68	87.36
Bra041170.1-P	Field mustard	cytosol, mitochondrion	15.79	82.19
Bra008029.1-P	Field mustard	cytosol	72.63	78.41
KRH47707	Soybean	cytosol	69.21	75.79
CDY03642	Canola	mitochondrion	72.89	74.86
KRH69015	Soybean	cytosol	74.74	74.35
CDX82154	Canola	mitochondrion	72.89	74.06
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	76.05	73.35
CDX72907	Canola	cytosol	72.89	71.95
PGSC0003DMT400074245	Potato	cytosol	75.26	71.68
CDX96399	Canola	cytosol	72.63	71.5
AT1G53880.1	Thale cress	cytosol	71.84	70.91
KRG97288	Soybean	extracellular	73.68	70.71
Bra039699.1-P	Field mustard	cytosol	70.0	69.45
CDY36614	Canola	cytosol	70.53	69.43
CDY24066	Canola	cytosol	70.26	69.35
Solyc12g049580.1.1	Tomato	nucleus	73.95	68.7
AT1G72340.2	Thale cress	cytosol, plastid	72.11	66.99
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	74.74	49.05
AT1G53900.2	Thale cress	mitochondrion	71.84	45.2
Os03t0645200-01	Rice	cytosol, plastid	10.53	26.67
Os10t0392700-02	Rice	cytosol, mitochondrion, plastid	13.95	15.77
Os12t0617100-01	Rice	mitochondrion	21.84	13.67

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	EntrezGene:4352258	ProteinID:ABA98593.1
ProteinID:BAT17230.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like
EnsemblPlantsGene:Os12g0497400	EnsemblPlants:Os12t0497400-01	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18	UniProt:Q2QQD9
SUPFAM:SSF100950	UniParc:UPI0000681070	RefSeq:XP_015618343.1	SEG:seg	:	:

Description

Similar to Initiation factor 2 subunit family protein, expressed. (Os12t0497400-01);Initiation factor 2B related family protein. (Os12t0497400-02)

Coordinates

chr12:-:18879433..18882393

Molecular Weight (calculated)

40776.8 Da

IEP (calculated)

5.122

GRAVY (calculated)

0.035

Length

380 amino acids

Sequence
(BLAST)

001: MEPDASSAAA AQNPNPNPST GLPPISAYYQ TRAEHHAVVS SDWLAHAAAA ASLPPSSDAA DADAASDAAA LLSPGSNGGG GGVIEEFNFW RRKPEAAEAV
101: AAIMALAAVI RSSRATTMME LEIELKKASD KLKSWDATSI SLSAACDLFM RFVTRTSHLE HEKFDAAKSR LIERGEKFGE ISLKARKTIA MLSQDFISDG
201: CTILVHGYSR VVLEVLKLAA SNRKLFRVLC TEGRPDRTGL RMSNELAALG IPVKVLIDSA VAYSMDEVDM VFVGADGVVE SGGIINMMGT YQIALVAHSM
301: NKPVYVAAES YKFARLYPLD QKDMTPAHRP IDFGVPIPAG VEVETSARDY TPPQYLTLLL TDLGVLTPSV VSDELIQLYL

Best Arabidopsis Sequence Match ( AT1G53900.2 )
(BLAST)

001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL

Arabidopsis Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53900]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.