Factsheet for Solyc12g049580.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53880.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074245	Potato	cytosol	94.13	96.49
Bra008029.1-P	Field mustard	cytosol	74.33	86.36
CDY03642	Canola	mitochondrion	77.51	85.68
Bra041170.1-P	Field mustard	cytosol, mitochondrion	15.16	84.93
CDX82154	Canola	mitochondrion	77.51	84.76
GSMUA_Achr11P...	Banana	cytosol	56.97	84.12
KRH69015	Soybean	cytosol	76.53	81.94
CDX72907	Canola	cytosol	77.02	81.82
CDX96399	Canola	cytosol	77.02	81.61
KRH47707	Soybean	cytosol	68.7	80.98
AT1G53880.1	Thale cress	cytosol	75.55	80.26
KRG97288	Soybean	extracellular	76.77	79.29
Bra039699.1-P	Field mustard	cytosol	73.84	78.85
CDY36614	Canola	cytosol	74.33	78.76
CDY24066	Canola	cytosol	73.84	78.44
AT1G72340.2	Thale cress	cytosol, plastid	76.04	76.04
TraesCS5D01G121400.1	Wheat	cytosol	66.99	75.69
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	66.99	75.48
TraesCS5A01G109200.2	Wheat	cytosol	66.75	75.41
HORVU5Hr1G038720.1	Barley	cytosol	66.5	75.14
OQU79155	Sorghum	cytosol	67.24	75.14
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	72.37	75.13
Os12t0497400-01	Rice	cytosol	68.7	73.95
TraesCS5B01G113900.1	Wheat	cytosol	60.39	70.98
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	80.68	56.99
AT1G53900.2	Thale cress	mitochondrion	75.55	51.16
Solyc11g005600.1.1	Tomato	nucleus	18.09	17.96
Solyc09g090400.2.1	Tomato	cytosol, plastid	16.63	17.66
Solyc12g038340.1.1	Tomato	nucleus	20.29	13.39
Solyc02g089810.2.1	Tomato	nucleus	20.29	13.03

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0044237	InterPro:IF-2B-related	UniProt:K4DFN8	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233
PANTHER:PTHR10233:SF18	SUPFAM:SSF100950	EnsemblPlantsGene:Solyc12g049580.1	EnsemblPlants:Solyc12g049580.1.1	UniParc:UPI0002769B7F	SEG:seg

Description

No Description!

Coordinates

chr12:+:36658529..36662751

Molecular Weight (calculated)

45603.2 Da

IEP (calculated)

4.958

GRAVY (calculated)

-0.222

Length

409 amino acids

Sequence
(BLAST)

001: MWRRSASFIL DKNQNDVSGS HHLSPLSVAD SSSMAETLLQ QEQQQQQQQQ QQQQLNPNPD ISAYYQTRAA HHGVVTSDWL SQAQAAVDQP SEDVVSSNVS
101: SKSGDLSGKF NVIDEFNNWR KQPDLAEAVA AIRALASVIR SSEATTMMEL EIELKKASDS LKSWDKTSIS LTAGCDLFMR YVTRTSALEY EDFNSAKSRF
201: LERAEKFGEI SYKARKIIAM LSQEFIFDGC TILVHGFSRV VFEVLKTAAQ NRKNFRVLCT EGRPDRSGLR LSNELAKLDV PVKLLIDSAV AYNMDEIDMV
301: FVGADGVVES GGVINMMGTY QIALVAKSMN KPVYVAAESY KFARLYPLDQ KDMFPALRPI DFGVPIPSKV EVETSARDYT PPQYLTLLFT DLGVLTPSVV
401: SDELIQLYL

Best Arabidopsis Sequence Match ( AT1G53880.1 )
(BLAST)

001: MWRESASFIL DKHQNNKPIS LTHSIDSPPP PSASMADENP NPNPISAYYQ TRAAHHGIVT SEWLEQAQAA VRRYPDRDSL VSGRPFSVIE DFNSWRQQPD
101: LAEAVAAIRA LAAVIRASEA TTMMELEIEL KKASDTLKSW DTTSISLTAG CDLFMRYVTR TSALEFEDFN SAKSRVLERA EKFGEISCKA RTIIAMLSQD
201: FIFDGCTILV HGFSRVVFEI LKTSAQNKKL FRVLCTEGRP DKTGVLLANE LAKLDIPVKL LIDSAVAYSM DEVDMVFVGA DGVVESGGII NMMGTYQIAL
301: VAQSMNKPVY VAAESYKFAR LYPLDQKDLE PALRPIDFSV PVPPKVEVER SARDYTPPQY LTLLFTDLGV LTPSVVSDEL IQLYL

Arabidopsis Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53880]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.