Factsheet for Solyc11g005600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0139g00250.t01	Wine grape	cytosol	83.01	82.01
GSMUA_Achr11P...	Banana	cytosol	61.65	79.87
KRH39206	Soybean	cytosol	78.16	77.59
KRH48472	Soybean	endoplasmic reticulum	77.43	76.87
AT3G07300.3	Thale cress	cytosol	75.73	76.28
Bra040371.1-P	Field mustard	cytosol	71.6	74.68
CDY28065	Canola	cytosol	74.03	74.39
KRH30036	Soybean	cytosol	74.76	74.22
CDY08006	Canola	extracellular	14.81	71.76
KXG38620	Sorghum	cytosol	72.33	71.63
TraesCS1B01G152300.1	Wheat	plastid	70.87	70.7
TraesCS1D01G135300.2	Wheat	plastid	70.87	70.53
TraesCS1A01G138500.3	Wheat	plastid	70.87	70.53
HORVU1Hr1G035490.4	Barley	plastid	70.87	70.19
Zm00001d033046_P002	Maize	cytosol	70.63	69.95
Solyc09g090400.2.1	Tomato	cytosol, plastid	64.56	69.09
Zm00001d014246_P004	Maize	cytosol	71.6	66.14
Os10t0392700-02	Rice	cytosol, mitochondrion, plastid	50.97	62.5
CDY34906	Canola	mitochondrion	68.93	61.47
GSMUA_Achr11P...	Banana	cytosol	13.84	54.81
Bra029637.1-P	Field mustard	cytosol	75.0	40.66
CDY24631	Canola	cytosol	73.3	40.16
Solyc12g049580.1.1	Tomato	nucleus	17.96	18.09
Solyc12g038340.1.1	Tomato	nucleus	19.9	13.23
Solyc02g089810.2.1	Tomato	nucleus	19.42	12.56

Protein Annotations

EnsemblPlants:Solyc11g005600.1.1	EnsemblPlantsGene:Solyc11g005600.1	Gene3D:3.40.50.10470	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related
InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23	PANTHER:PTHR10233	PANTHER:PTHR10233:SF9	PFAM:PF01008	SEG:seg
SUPFAM:SSF100950	UniParc:UPI00027698FF	UniProt:K4D4H3	MapMan:17.4.1.2.3.2	:	:

Description

No Description!

Coordinates

chr11:-:450933..456855

Molecular Weight (calculated)

44270.0 Da

IEP (calculated)

6.323

GRAVY (calculated)

-0.013

Length

412 amino acids

Sequence
(BLAST)

001: MNALVNEFII KLKKRKIEGS KTTAKLTAEV LRSCISQQRL PQTHQADALI DAIRGIGEKL IAANPVELAV GNIVRRVLNI IREEDVSLTA AAVGGWGISA
101: GSDDEDDVKQ DDHQGLSAAA VAAAARNTLR PPSLQTLLED IPQSTAVPRT SSSGGDSEGK SKSADKNSTS KKLKHNVIEA VNELIQDIAT CHDQIAEQAV
201: EHIHHNEVIL TLGNSRTVME FLCAAKEKKR SFRVFVAEGA PRYQGHALAK ELVARGLQTT VITDSAVFAI ISRVNMVVVG AHTVMANGGV IAPVGMNMVA
301: LAAQRHAVPF VVLAGTHKLC PLYPHNPEVL LNELKSPAEL LDFGEFSDCL DFESSSGSPL LDVVNPAFDY VPPNLVSLFI TDTGGHNASF MYRLIADYYS
401: ADDIVVKQKS IS

Best Arabidopsis Sequence Match ( AT3G07300.1 )
(BLAST)

001: MPDVQSTVVE FVNKLRKRKI EGSQATAKYT VELLRSVISH QRVPHANQAA ALIDAVKAVG EQLIAANPVE LAVGNVVRRV LHIIREEDLS LTTAAMGGLD
101: LLDASDDDDV DNCKGIGFPA MSAAVVAAAA RSTLRPPSLQ TLLEGTPESA TVPYTSSSGA DSESKTADKS SLTRKLKHDV IEGVNQLIQE IAGCHEQIAE
201: QAIEHIHQNE VILTLGSSRT VLEFLCAAKE KKRSFRVFVA EGAPRYQGHL LAKELVARGL QTTVITDSAV FAMISRVNMV IIGAHAVMAN GGVIGPVGVN
301: MAALAAQKHA VPFVVLAGSH KLCPLYPHNP EVLLNELRSP SELLDFGEFS DCLDFGAGSG SLQVVNPTFD YVPPNLVSLF ITDTGGHNPS YMYRLIADYY
401: SADDLVM

Arabidopsis Description

AT3G07300 protein [Source:UniProtKB/TrEMBL;Acc:B3H7H1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.