CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39206	Soybean	cytosol	98.55	98.55
KRH30036	Soybean	cytosol	85.54	85.54
VIT_13s0139g00250.t01	Wine grape	cytosol	84.58	84.17
AT3G07300.3	Thale cress	cytosol	79.52	80.68
GSMUA_Achr11P...	Banana	cytosol	60.96	79.56
CDY28065	Canola	cytosol	78.31	79.27
Bra040371.1-P	Field mustard	cytosol	74.94	78.73
Solyc11g005600.1.1	Tomato	nucleus	76.87	77.43
KXG38620	Sorghum	cytosol	73.98	73.8
Zm00001d033046_P002	Maize	cytosol	73.25	73.08
CDY08006	Canola	extracellular	14.94	72.94
TraesCS1B01G152300.1	Wheat	plastid	71.08	71.43
TraesCS1D01G135300.2	Wheat	plastid	71.08	71.26
TraesCS1A01G138500.3	Wheat	plastid	70.84	71.01
HORVU1Hr1G035490.4	Barley	plastid	71.08	70.91
PGSC0003DMT400044316	Potato	cytosol	69.88	69.88
Zm00001d014246_P004	Maize	cytosol	74.46	69.28
CDY34906	Canola	mitochondrion	69.64	62.55
GSMUA_Achr11P...	Banana	cytosol	15.66	62.5
Os10t0392700-02	Rice	cytosol, mitochondrion, plastid	49.64	61.31
Bra029637.1-P	Field mustard	cytosol	78.8	43.03
CDY24631	Canola	cytosol	76.87	42.42
KRH47707	Soybean	cytosol	18.07	21.61
KRH69015	Soybean	cytosol	18.55	20.16
KRG97288	Soybean	extracellular	18.55	19.44
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	18.55	13.92
KRH01494	Soybean	nucleus	20.24	13.21
KRH18264	Soybean	cytosol	20.48	12.9
KRG93828	Soybean	endoplasmic reticulum, nucleus	20.24	12.73
KRH54799	Soybean	plastid	17.83	10.85

Protein Annotations

KEGG:00270+5.3.1.23	EntrezGene:100801044	MapMan:17.4.1.2.3.2	Gene3D:3.40.50.10470	EMBL:ACUP02004240	EnsemblPlantsGene:GLYMA_07G090900
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0044237	UniProt:I1KIW2	InterPro:IF-2B-related	ProteinID:KRH48471.1	EnsemblPlants:KRH48472
ProteinID:KRH48472	ProteinID:KRH48472.1	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF9
MetaCyc:PWY-4361	MetaCyc:PWY-7174	SUPFAM:SSF100950	UniParc:UPI0002338652	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:8509223..8515754

Molecular Weight (calculated)

44540.1 Da

IEP (calculated)

6.019

GRAVY (calculated)

-0.060

Length

415 amino acids

Sequence
(BLAST)

001: MPDVHTLVND FLNQLKKRKI EGSQATAKLT AELLRSVISQ QRVPHTNQAT TLINAVRAVG EQLIAANPIE LAVGNIVRRV LHIIREEDLS LATAAMDGLG
101: VSAASDDEDD AERDENPVLS AAAVAAAARS TLRPPSLQTL LEDTSDSAAA PPTSSSGGES DGRSRSVEKG SRGRKLKHDV IEAVNELIQD ISTCYEQIAE
201: QAVEHIHHNE VILTLGSSKT VLEFLYAAKE KQRSFKVFVA EGAPRYQGHL LAKELAARGL QTTVITDSAV FAMISRVNMV IVGAHAVMAN GGVIAPVGLN
301: MAALAAQRHA VPFVVLAGSH KLCPLYPHNP EVLLNELRSP SELLDFGEFS DCMDSASGAG SLHVVNPTFD YVPPKLVSLF ITDTGGHNPS YMYRLIADYY
401: SADDLVVKRR PTTGS

Best Arabidopsis Sequence Match ( AT3G07300.1 )
(BLAST)

001: MPDVQSTVVE FVNKLRKRKI EGSQATAKYT VELLRSVISH QRVPHANQAA ALIDAVKAVG EQLIAANPVE LAVGNVVRRV LHIIREEDLS LTTAAMGGLD
101: LLDASDDDDV DNCKGIGFPA MSAAVVAAAA RSTLRPPSLQ TLLEGTPESA TVPYTSSSGA DSESKTADKS SLTRKLKHDV IEGVNQLIQE IAGCHEQIAE
201: QAIEHIHQNE VILTLGSSRT VLEFLCAAKE KKRSFRVFVA EGAPRYQGHL LAKELVARGL QTTVITDSAV FAMISRVNMV IIGAHAVMAN GGVIGPVGVN
301: MAALAAQKHA VPFVVLAGSH KLCPLYPHNP EVLLNELRSP SELLDFGEFS DCLDFGAGSG SLQVVNPTFD YVPPNLVSLF ITDTGGHNPS YMYRLIADYY
401: SADDLVM

Arabidopsis Description

AT3G07300 protein [Source:UniProtKB/TrEMBL;Acc:B3H7H1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.