CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53880.1	KRH14106	AT5G35750.1	18642946
AT1G53880.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69015	Soybean	cytosol	89.65	92.93
GSMUA_Achr11P...	Banana	cytosol	60.86	87.0
KRH47707	Soybean	cytosol	75.25	85.88
Bra041170.1-P	Field mustard	cytosol, mitochondrion	15.66	84.93
Bra008029.1-P	Field mustard	cytosol	75.0	84.38
CDY03642	Canola	mitochondrion	77.53	82.97
CDX82154	Canola	mitochondrion	77.02	81.55
PGSC0003DMT400074245	Potato	cytosol	80.3	79.7
CDX72907	Canola	cytosol	77.27	79.48
AT1G53880.1	Thale cress	cytosol	77.02	79.22
CDX96399	Canola	cytosol	77.02	79.02
Bra039699.1-P	Field mustard	cytosol	74.49	77.02
Solyc12g049580.1.1	Tomato	nucleus	79.29	76.77
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	70.2	76.58
TraesCS5A01G109200.2	Wheat	cytosol	69.95	76.52
TraesCS5D01G121400.1	Wheat	cytosol	69.95	76.52
CDY36614	Canola	cytosol	74.49	76.42
CDY24066	Canola	cytosol	74.24	76.36
HORVU5Hr1G038720.1	Barley	cytosol	69.7	76.24
OQU79155	Sorghum	cytosol	70.2	75.96
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	75.25	75.63
AT1G72340.2	Thale cress	cytosol, plastid	76.52	74.08
Os12t0497400-01	Rice	cytosol	70.71	73.68
TraesCS5B01G113900.1	Wheat	cytosol	62.63	71.26
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	85.35	58.38
AT1G53900.2	Thale cress	mitochondrion	79.29	51.99
KRH48472	Soybean	endoplasmic reticulum	19.44	18.55
KRH39206	Soybean	cytosol	19.44	18.55
KRH30036	Soybean	cytosol	18.94	18.07
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	22.47	16.09
KRH01494	Soybean	nucleus	22.47	13.99
KRH18264	Soybean	cytosol	23.23	13.96
KRG93828	Soybean	endoplasmic reticulum, nucleus	22.98	13.79
KRH54799	Soybean	plastid	23.23	13.49

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	UniProt:A0A0R0F3P0	EMBL:ACUP02012181
EnsemblPlantsGene:GLYMA_19G262500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	EnsemblPlants:KRG97288	ProteinID:KRG97288
ProteinID:KRG97288.1	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18	MetaCyc:PWY-4361
MetaCyc:PWY-7174	SUPFAM:SSF100950	SignalP:SignalP-noTM	UniParc:UPI0006EE0292	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:50532466..50535071

Molecular Weight (calculated)

44197.1 Da

IEP (calculated)

5.496

GRAVY (calculated)

-0.098

Length

396 amino acids

Sequence
(BLAST)

001: MYLLLTLIIF SRLLNSKTPG EGEGRSEMWW RSASFIMDRQ QQQNQGDSSN PNISAYYETR AAHHGVVTSD WLAQAQAAIG PEPQPQPQLS PDPDKPFSVI
101: DQFNSWRKQP HLAEAVAAIR ALAAVIRSSQ ATTMMQLEIE LKKASDSLKS WDTSSISLTA GCDLFMRYVT RTSALEYEDF NSAKSRLIER AEKFGEISYK
201: ARKVIAMLSQ DFIFDGCTIL VHGFSRVVFE VLKLAAQNNK LFRVFCTEGR PDRTGLRLSN ELAKLDVPVK LLIDSAVAYT MDEVDMVFVG ADGVVESGGI
301: INMMGTYQIA LVAHSMNKPV YVAAESYKFA RLYPLDQKDL APALRPIDFG VPIPSKVEVE RSARDYTPPQ YLTLLFTDLG VLTPSVVSDE LIQLYL

Best Arabidopsis Sequence Match ( AT1G72340.2 )
(BLAST)

001: MIFLEKATVY YLQFFHFEEF SQEKKKSMWR RSPSFILDER RSSNSPPMAD TTRGPFQNPD SISAYYQTRA AHHGVITSDW LAQAQAAVGG VSGDAQHDLS
101: VTDLGNEKSF NVIEEFNNWR KQPDLAEAVA AIRALAAVIR ASEASTMMEL EIELKKASDT LKSWDKTSIS LTAGCDLFIR YVTRTSALEY EDFNSAKSRL
201: LERAEKFGEI SCKARRIIAM LSQDFIFDGC TILVHGLSRV VLEILKTAAQ NNKLFRVLCT EGRPDGTGVL LSSELSKLDI PVKLLLDSAV AYSMDEVDMV
301: FVGADGVVES GGIINMMGTY QIALVAHSMN KPVYVAAESY KFARLYPLDQ KDMAPALRPI EFGVKIPTKV EVERSARDYT PPQYLTLLFT DLGVLSPSVV
401: SDELIQLYL

Arabidopsis Description

NagB/RpiA/CoA transferase-like superfamily protein [Source:TAIR;Acc:AT1G72340]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.