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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 3
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, extracellular, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr11P... Banana cytosol 82.19 21.66
Bra008029.1-P Field mustard cytosol 91.78 19.03
CDX96399 Canola cytosol 93.15 17.62
KRH47707 Soybean cytosol 83.56 17.58
TraesCS5B01G113900.1 Wheat cytosol 82.19 17.24
CDX72907 Canola cytosol 90.41 17.14
TraesCS5D01G121400.1 Wheat cytosol 82.19 16.57
TraesCS5A01G109200.2 Wheat cytosol 82.19 16.57
HORVU5Hr1G038720.1 Barley cytosol 82.19 16.57
Zm00001d041758_P001 Maize cytoskeleton, cytosol, peroxisome 80.82 16.25
KRH69015 Soybean cytosol 84.93 16.23
AT1G72340.2 Thale cress cytosol, plastid 90.41 16.14
OQU79155 Sorghum cytosol 79.45 15.85
Os12t0497400-01 Rice cytosol 82.19 15.79
KRG97288 Soybean extracellular 84.93 15.66
PGSC0003DMT400074245 Potato cytosol 84.93 15.54
Solyc12g049580.1.1 Tomato nucleus 84.93 15.16
Bra039699.1-P Field mustard cytosol 79.45 15.14
GSMUA_Achr8P16800_001 Banana mitochondrion, plastid 80.82 14.97
VIT_09s0002g00390.t01 Wine grape mitochondrion, plastid 86.3 10.88
Bra040371.1-P Field mustard cytosol 24.66 4.56
Bra029637.1-P Field mustard cytosol 24.66 2.37
Bra028196.1-P Field mustard nucleus 19.18 2.22
Bra014165.1-P Field mustard mitochondrion 17.81 1.98
Protein Annotations
EnsemblPlants:Bra041170.1EnsemblPlants:Bra041170.1-PEnsemblPlantsGene:Bra041170Gene3D:3.40.50.10470GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0044237InterPro:IF-2B-relatedInterPro:NagB/RpiA_transferase-likeKEGG:00270+5.3.1.23PANTHER:PTHR10233
PANTHER:PTHR10233:SF18PFAM:PF01008SUPFAM:SSF100950UniParc:UPI000253EDB7UniProt:M4FJ89MapMan:35.2
Description
AT1G72340 (E=3e-031) | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein
Coordinates
chrScaffold004047:+:11..321
Molecular Weight (calculated)
8336.4 Da
IEP (calculated)
4.923
GRAVY (calculated)
0.156
Length
73 amino acids
Sequence
(BLAST)
1: MLRLRVTRLY PLDQKDMAPA LRPIEFGVKI PAKVEVEMSA RDYTPPQYLT LLFTDLGVLS PSVVSDELIQ LYL
Best Arabidopsis Sequence Match ( AT1G72340.2 )
(BLAST)
001: MIFLEKATVY YLQFFHFEEF SQEKKKSMWR RSPSFILDER RSSNSPPMAD TTRGPFQNPD SISAYYQTRA AHHGVITSDW LAQAQAAVGG VSGDAQHDLS
101: VTDLGNEKSF NVIEEFNNWR KQPDLAEAVA AIRALAAVIR ASEASTMMEL EIELKKASDT LKSWDKTSIS LTAGCDLFIR YVTRTSALEY EDFNSAKSRL
201: LERAEKFGEI SCKARRIIAM LSQDFIFDGC TILVHGLSRV VLEILKTAAQ NNKLFRVLCT EGRPDGTGVL LSSELSKLDI PVKLLLDSAV AYSMDEVDMV
301: FVGADGVVES GGIINMMGTY QIALVAHSMN KPVYVAAESY KFARLYPLDQ KDMAPALRPI EFGVKIPTKV EVERSARDYT PPQYLTLLFT DLGVLSPSVV
401: SDELIQLYL
Arabidopsis Description
NagB/RpiA/CoA transferase-like superfamily protein [Source:TAIR;Acc:AT1G72340]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.