Factsheet for AT1G72340.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03642	Canola	mitochondrion	86.31	95.41
Bra008029.1-P	Field mustard	cytosol	81.91	95.17
CDX82154	Canola	mitochondrion	86.8	94.92
CDX72907	Canola	cytosol	89.0	94.55
CDX96399	Canola	cytosol	88.51	93.78
Bra041170.1-P	Field mustard	cytosol, mitochondrion	16.14	90.41
GSMUA_Achr11P...	Banana	cytosol	56.48	83.39
AT1G53880.1	Thale cress	cytosol	77.02	81.82
KRH47707	Soybean	cytosol	67.73	79.83
KRH69015	Soybean	cytosol	74.33	79.58
PGSC0003DMT400074245	Potato	cytosol	76.28	78.2
KRG97288	Soybean	extracellular	74.08	76.52
Solyc12g049580.1.1	Tomato	nucleus	76.04	76.04
TraesCS5D01G121400.1	Wheat	cytosol	66.26	74.86
TraesCS5A01G109200.2	Wheat	cytosol	66.01	74.59
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	65.77	74.1
OQU79155	Sorghum	cytosol	66.26	74.04
HORVU5Hr1G038720.1	Barley	cytosol	65.53	74.03
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	71.15	73.86
Os12t0497400-01	Rice	cytosol	66.99	72.11
TraesCS5B01G113900.1	Wheat	cytosol	60.15	70.69
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	78.73	55.61
AT1G53900.2	Thale cress	mitochondrion	78.97	53.48
AT2G44070.1	Thale cress	cytosol	18.09	22.22
AT3G07300.3	Thale cress	cytosol	18.34	18.34
AT5G38640.1	Thale cress	cytosol	22.25	14.17
AT1G48970.1	Thale cress	mitochondrion	21.52	13.21

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	EntrezGene:843566	UniProt:A0A1P8AVS2
ProteinID:AEE35308.1	ProteinID:ANM60725.1	ArrayExpress:AT1G72340	EnsemblPlantsGene:AT1G72340	RefSeq:AT1G72340	TAIR:AT1G72340
RefSeq:AT1G72340-TAIR-G	EnsemblPlants:AT1G72340.2	EMBL:AY062581	EMBL:AY086207	Unigene:At.18244	EMBL:BT000134
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	GO:GO:0044237	InterPro:IF-2B-related	RefSeq:NP_001319366.1	RefSeq:NP_565041.2
InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18	SUPFAM:SSF100950	UniParc:UPI0008491C69
SEG:seg	:	:	:	:	:

Description

NagB/RpiA/CoA transferase-like superfamily protein [Source:TAIR;Acc:AT1G72340]

Coordinates

chr1:+:27236797..27238612

Molecular Weight (calculated)

45594.7 Da

IEP (calculated)

5.199

GRAVY (calculated)

-0.077

Length

409 amino acids

Sequence
(BLAST)

001: MIFLEKATVY YLQFFHFEEF SQEKKKSMWR RSPSFILDER RSSNSPPMAD TTRGPFQNPD SISAYYQTRA AHHGVITSDW LAQAQAAVGG VSGDAQHDLS
101: VTDLGNEKSF NVIEEFNNWR KQPDLAEAVA AIRALAAVIR ASEASTMMEL EIELKKASDT LKSWDKTSIS LTAGCDLFIR YVTRTSALEY EDFNSAKSRL
201: LERAEKFGEI SCKARRIIAM LSQDFIFDGC TILVHGLSRV VLEILKTAAQ NNKLFRVLCT EGRPDGTGVL LSSELSKLDI PVKLLLDSAV AYSMDEVDMV
301: FVGADGVVES GGIINMMGTY QIALVAHSMN KPVYVAAESY KFARLYPLDQ KDMAPALRPI EFGVKIPTKV EVERSARDYT PPQYLTLLFT DLGVLSPSVV
401: SDELIQLYL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.