CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03642	Canola	mitochondrion	97.59	98.65
CDX72907	Canola	cytosol	95.99	93.25
CDX96399	Canola	cytosol	95.72	92.75
AT1G72340.2	Thale cress	cytosol, plastid	94.92	86.8
GSMUA_Achr11P...	Banana	cytosol	61.76	83.39
KRH69015	Soybean	cytosol	81.82	80.1
PGSC0003DMT400074245	Potato	cytosol	85.03	79.7
KRH47707	Soybean	cytosol	73.53	79.25
CDY36614	Canola	cytosol	80.75	78.24
Solyc12g049580.1.1	Tomato	nucleus	84.76	77.51
CDY24066	Canola	cytosol	79.68	77.4
KRG97288	Soybean	extracellular	81.55	77.02
TraesCS5D01G121400.1	Wheat	cytosol	72.99	75.41
TraesCS5A01G109200.2	Wheat	cytosol	72.73	75.14
HORVU5Hr1G038720.1	Barley	cytosol	72.19	74.59
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	72.19	74.38
OQU79155	Sorghum	cytosol	72.46	74.04
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	77.81	73.86
Os12t0497400-01	Rice	cytosol	74.06	72.89
TraesCS5B01G113900.1	Wheat	cytosol	66.04	70.98
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	84.22	54.4
CDY28065	Canola	cytosol	19.25	17.56
CDY08006	Canola	extracellular	3.74	16.47
CDY49077	Canola	cytosol, plastid	21.39	15.59
CDY34906	Canola	mitochondrion	17.91	14.5
CDY01647	Canola	cytosol	24.33	14.47
CDX74513	Canola	nucleus	24.33	14.44
CDY16477	Canola	mitochondrion	23.26	13.24
CDX77270	Canola	mitochondrion	23.26	13.24
CDY24631	Canola	cytosol	18.98	9.44
CDY27424	Canola	cytosol	2.94	9.02

Protein Annotations

KEGG:00270+5.3.1.23	Gene3D:1.20.120.1070	MapMan:17.4.1.2.3.1	Gene3D:3.40.50.10470	GO:A0A078D1N2	EnsemblPlants:CDX82154
ProteinID:CDX82154	ProteinID:CDX82154.1	ncoils:Coil	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0044237	EnsemblPlantsGene:GSBRNA2T00137211001	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233
PANTHER:PTHR10233:SF18	MetaCyc:PWY-4361	MetaCyc:PWY-7174	SUPFAM:SSF100950	UniPathway:UPA00904	UniParc:UPI0004EC650C
SEG:seg	:	:	:	:	:

Description

BnaC02g21360D

Coordinates

chrLK031827:-:1274702..1276938

Molecular Weight (calculated)

41274.5 Da

IEP (calculated)

4.847

GRAVY (calculated)

-0.020

Length

374 amino acids

Sequence
(BLAST)

001: MWRRSASFIL DRSSNSPPMA DTTQTPFQNP DAISAYYQTR AAHHGVITSD WLAQAQAAVE QPDSSVSDLG AERSFNVIDE FNGWRKQPDL AEAVAAIRAM
101: AAVIRASEAT TMMELEIELK KASDTLKSWD KTSISLTAGC DLFIRYVTRT SALEYEDFNS AKSRLLERAE KFGEISCKAR KIIAMLSQDF IFDGCTVLVH
201: GLSRVVLEVL KTAAQNNKLF RVLCTEGRPD GTGVLLSNEL SKLDIPVKLL LDSAVAYSMD EVDMVFVGAD GVVESGGIIN MMGTYQIALV AHSMNKPVYV
301: AAESYKFARL YPLDQKDMAP ALRPIEFGVK IPAKVEVERS ARDYTPPQYL TLLFTDLGVL SPSVVSDELI QLYL

Best Arabidopsis Sequence Match ( AT1G72340.2 )
(BLAST)

001: MIFLEKATVY YLQFFHFEEF SQEKKKSMWR RSPSFILDER RSSNSPPMAD TTRGPFQNPD SISAYYQTRA AHHGVITSDW LAQAQAAVGG VSGDAQHDLS
101: VTDLGNEKSF NVIEEFNNWR KQPDLAEAVA AIRALAAVIR ASEASTMMEL EIELKKASDT LKSWDKTSIS LTAGCDLFIR YVTRTSALEY EDFNSAKSRL
201: LERAEKFGEI SCKARRIIAM LSQDFIFDGC TILVHGLSRV VLEILKTAAQ NNKLFRVLCT EGRPDGTGVL LSSELSKLDI PVKLLLDSAV AYSMDEVDMV
301: FVGADGVVES GGIINMMGTY QIALVAHSMN KPVYVAAESY KFARLYPLDQ KDMAPALRPI EFGVKIPTKV EVERSARDYT PPQYLTLLFT DLGVLSPSVV
401: SDELIQLYL

Arabidopsis Description

NagB/RpiA/CoA transferase-like superfamily protein [Source:TAIR;Acc:AT1G72340]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.