Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G53880.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G53880.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24066 | Canola | cytosol | 97.15 | 97.4 |
| AT1G53880.1 | Thale cress | cytosol | 90.16 | 90.39 |
| GSMUA_Achr11P... | Banana | cytosol | 60.1 | 83.75 |
| CDY03642 | Canola | mitochondrion | 78.24 | 81.62 |
| CDX82154 | Canola | mitochondrion | 78.24 | 80.75 |
| KRH47707 | Soybean | cytosol | 71.5 | 79.54 |
| CDX72907 | Canola | cytosol | 79.02 | 79.22 |
| CDX96399 | Canola | cytosol | 78.76 | 78.76 |
| KRH69015 | Soybean | cytosol | 77.72 | 78.53 |
| PGSC0003DMT400074245 | Potato | cytosol | 79.53 | 76.94 |
| GSMUA_Achr8P16800_001 | Banana | mitochondrion, plastid | 76.17 | 74.62 |
| KRG97288 | Soybean | extracellular | 76.42 | 74.49 |
| Solyc12g049580.1.1 | Tomato | nucleus | 78.76 | 74.33 |
| TraesCS5A01G109200.2 | Wheat | cytosol | 68.39 | 72.93 |
| TraesCS5D01G121400.1 | Wheat | cytosol | 68.39 | 72.93 |
| Zm00001d041758_P001 | Maize | cytoskeleton, cytosol, peroxisome | 68.39 | 72.73 |
| HORVU5Hr1G038720.1 | Barley | cytosol | 68.13 | 72.65 |
| OQU79155 | Sorghum | cytosol | 68.65 | 72.4 |
| Os12t0497400-01 | Rice | cytosol | 69.43 | 70.53 |
| TraesCS5B01G113900.1 | Wheat | cytosol | 62.44 | 69.25 |
| AT1G53900.2 | Thale cress | mitochondrion | 90.16 | 57.62 |
| VIT_09s0002g00390.t01 | Wine grape | mitochondrion, plastid | 80.05 | 53.37 |
| CDY28065 | Canola | cytosol | 20.73 | 19.51 |
| CDY08006 | Canola | extracellular | 4.15 | 18.82 |
| CDY34906 | Canola | mitochondrion | 19.17 | 16.02 |
| CDY49077 | Canola | cytosol, plastid | 20.98 | 15.79 |
| CDY01647 | Canola | cytosol | 24.61 | 15.1 |
| CDX74513 | Canola | nucleus | 24.35 | 14.92 |
| CDX77270 | Canola | mitochondrion | 24.35 | 14.31 |
| CDY16477 | Canola | mitochondrion | 24.09 | 14.16 |
| CDY27424 | Canola | cytosol | 3.63 | 11.48 |
| CDY24631 | Canola | cytosol | 20.47 | 10.51 |
Protein Annotations
| KEGG:00270+5.3.1.23 | Gene3D:1.20.120.1070 | MapMan:17.4.1.2.3.1 | Gene3D:3.40.50.10470 | GO:A0A078HGT8 | UniProt:A0A078HGT8 |
| EnsemblPlants:CDY36614 | ProteinID:CDY36614 | ProteinID:CDY36614.1 | ncoils:Coil | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0044237 | EnsemblPlantsGene:GSBRNA2T00062323001 | InterPro:IF-2B-related | InterPro:NagB/RpiA_transferase-like | PFAM:PF01008 |
| PANTHER:PTHR10233 | PANTHER:PTHR10233:SF18 | MetaCyc:PWY-4361 | MetaCyc:PWY-7174 | SUPFAM:SSF100950 | UniPathway:UPA00904 |
| UniParc:UPI0004EC4CC0 | SEG:seg | : | : | : | : |
Description
BnaC06g06670DBnaC06g06670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGT8]
Coordinates
chrLK032379:+:155814..158261
Molecular Weight (calculated)
42847.6 Da
IEP (calculated)
5.739
GRAVY (calculated)
-0.059
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MWRRSASFVL DKHHNNKPIS LTPSLDSPPP LSDSMAEVNP NPNPVSAYYQ TRAKHHGIVT SDWLEQAQAA VVRYPDKDSP VAGRRPFSVI EEFDNWRQQP
101: DLAEAVAAIR ALAAVIRASE ATTMMELEIE LKKASDTLKS WDTTSISLTA GCDLFMRYVT RTSALEFEDF NAAKARVLGR AEKFGEISYK ARKIIAVLSQ
201: DFIFDGCTIL VHGFSRVVLE ILKTAAQNKK LFRVLCTEGR PDKTGVLLAK ELAKLDVPVK LLIDSAVAYS MDEVDMVIFG ADGVVESGGV INMMGTYQIA
301: LVAHTMNKPV YVAAESYKFA RLYPLDQKDL EPALRPVDFG VPVPPKVEVE RSARDYTPPQ YLTMLFTDLG VLTPSVVSDE LIQLYL
101: DLAEAVAAIR ALAAVIRASE ATTMMELEIE LKKASDTLKS WDTTSISLTA GCDLFMRYVT RTSALEFEDF NAAKARVLGR AEKFGEISYK ARKIIAVLSQ
201: DFIFDGCTIL VHGFSRVVLE ILKTAAQNKK LFRVLCTEGR PDKTGVLLAK ELAKLDVPVK LLIDSAVAYS MDEVDMVIFG ADGVVESGGV INMMGTYQIA
301: LVAHTMNKPV YVAAESYKFA RLYPLDQKDL EPALRPVDFG VPVPPKVEVE RSARDYTPPQ YLTMLFTDLG VLTPSVVSDE LIQLYL
001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQLE TEIFEEFIKM WRESASFILD KHQNNKPISL THSIDSPPPP SASMADENPN PNPISAYYQT RAAHHGIVTS EWLEQAQAAV RRYPDRDSLV
301: SGRPFSVIED FNSWRQQPDL AEAVAAIRAL AAVIRASEAT TMMELEIELK KASDTLKSWD TTSISLTAGC DLFMRYVTRT SALEFEDFNS AKSRVLERAE
401: KFGEISCKAR TIIAMLSQDF IFDGCTILVH GFSRVVFEIL KTSAQNKKLF RVLCTEGRPD KTGVLLANEL AKLDIPVKLL IDSAVAYSMD EVDMVFVGAD
501: GVVESGGIIN MMGTYQIALV AQSMNKPVYV AAESYKFARL YPLDQKDLEP ALRPIDFSVP VPPKVEVERS ARDYTPPQYL TLLFTDLGVL TPSVVSDELI
601: QLYL
Arabidopsis Description
Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53900]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.