Factsheet for PGSC0003DMT400074245

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53880.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g049580.1.1	Tomato	nucleus	96.49	94.13
Bra008029.1-P	Field mustard	cytosol	76.69	86.93
CDY03642	Canola	mitochondrion	79.7	85.95
CDX82154	Canola	mitochondrion	79.7	85.03
Bra041170.1-P	Field mustard	cytosol, mitochondrion	15.54	84.93
GSMUA_Achr11P...	Banana	cytosol	58.9	84.84
KRH69015	Soybean	cytosol	79.45	82.98
KRH47707	Soybean	cytosol	71.43	82.13
CDX72907	Canola	cytosol	79.2	82.08
CDX96399	Canola	cytosol	79.2	81.87
AT1G53880.1	Thale cress	cytosol	78.2	81.04
KRG97288	Soybean	extracellular	79.7	80.3
Bra039699.1-P	Field mustard	cytosol	76.44	79.63
CDY36614	Canola	cytosol	76.94	79.53
CDY24066	Canola	cytosol	76.44	79.22
Zm00001d041758_P001	Maize	cytoskeleton, cytosol, peroxisome	69.67	76.58
TraesCS5D01G121400.1	Wheat	cytosol	69.42	76.52
OQU79155	Sorghum	cytosol	70.18	76.5
AT1G72340.2	Thale cress	cytosol, plastid	78.2	76.28
TraesCS5A01G109200.2	Wheat	cytosol	69.17	76.24
GSMUA_Achr8P16800_001	Banana	mitochondrion, plastid	75.19	76.14
HORVU5Hr1G038720.1	Barley	cytosol	68.92	75.97
Os12t0497400-01	Rice	cytosol	71.68	75.26
TraesCS5B01G113900.1	Wheat	cytosol	62.41	71.55
VIT_09s0002g00390.t01	Wine grape	mitochondrion, plastid	83.96	57.86
AT1G53900.2	Thale cress	mitochondrion	78.2	51.66
PGSC0003DMT400044316	Potato	cytosol	19.05	18.31
PGSC0003DMT400026040	Potato	cytosol	22.56	14.13
PGSC0003DMT400059378	Potato	cytosol, plastid	21.8	14.03

Protein Annotations

EnsemblPlants:PGSC0003DMT400074245	EnsemblPlantsGene:PGSC0003DMG400028851	EntrezGene:102587123	Gene3D:1.20.120.1070	Gene3D:3.40.50.10470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23
ncoils:Coil	PANTHER:PTHR10233	PANTHER:PTHR10233:SF18	PFAM:PF01008	PGSC:PGSC0003DMG400028851	RefSeq:XP_006362098.1
SEG:seg	SUPFAM:SSF100950	UniParc:UPI00029675A8	UniProt:M1CTD9	MapMan:17.4.1.2.3.1	:

Description

Translation initiation factor eif-2b alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400028851]

Coordinates

chr12:-:53051863..53056164

Molecular Weight (calculated)

44215.7 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.129

Length

399 amino acids

Sequence
(BLAST)

001: MWRRSASFIL DKNQNDVVAK PESHHLSPLS VAVSSSMAET LQQEQQPNPD ISAYYQTRAA HHGVVTSDWL AQAQAAVDQP SEDAVSSNYS SKSGDLSGKF
101: SVIDEFNNWR KQPDLAEAVA AIRALASVIR SSEATTMMEL EIELKKASDS LKSWDKTSIS LTAGCDLFMR YVTRTSALEY EDFNSAKSRL LERAEKFGEI
201: SYKARKIIAM LSQEFIFDGC TILVHGFSRV VFEVLKTAAQ NRKNFRVLCT EGRPDRSGLR LSNELAKLDV PVKLLIDSAV AYSMDEVDMV FVGADGVVES
301: GGVINMMGTY QIALVAKSMN KPVYVAAESY KFARLYPLDQ KDMVPALRPI DFGVPIPSKV EVETSARDYT PPQYLTLLFT DLGVLTPSVV SDELIQLYL

Best Arabidopsis Sequence Match ( AT1G53880.1 )
(BLAST)

001: MWRESASFIL DKHQNNKPIS LTHSIDSPPP PSASMADENP NPNPISAYYQ TRAAHHGIVT SEWLEQAQAA VRRYPDRDSL VSGRPFSVIE DFNSWRQQPD
101: LAEAVAAIRA LAAVIRASEA TTMMELEIEL KKASDTLKSW DTTSISLTAG CDLFMRYVTR TSALEFEDFN SAKSRVLERA EKFGEISCKA RTIIAMLSQD
201: FIFDGCTILV HGFSRVVFEI LKTSAQNKKL FRVLCTEGRP DKTGVLLANE LAKLDIPVKL LIDSAVAYSM DEVDMVFVGA DGVVESGGII NMMGTYQIAL
301: VAQSMNKPVY VAAESYKFAR LYPLDQKDLE PALRPIDFSV PVPPKVEVER SARDYTPPQY LTLLFTDLGV LTPSVVSDEL IQLYL

Arabidopsis Description

Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Source:TAIR;Acc:AT1G53880]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.