Factsheet for PGSC0003DMT400044316

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090400.2.1	Tomato	cytosol, plastid	90.12	97.14
VIT_13s0139g00250.t01	Wine grape	cytosol	72.53	72.18
AT3G07300.3	Thale cress	cytosol	70.36	71.39
GSMUA_Achr11P...	Banana	cytosol	54.46	71.07
Bra040371.1-P	Field mustard	cytosol	67.23	70.63
KRH39206	Soybean	cytosol	70.36	70.36
CDY28065	Canola	cytosol	69.4	70.24
KRH48472	Soybean	endoplasmic reticulum	69.88	69.88
TraesCS1B01G152300.1	Wheat	plastid	66.99	67.31
TraesCS1D01G135300.2	Wheat	plastid	66.99	67.15
TraesCS1A01G138500.3	Wheat	plastid	66.75	66.91
HORVU1Hr1G035490.4	Barley	plastid	66.75	66.59
KRH30036	Soybean	cytosol	66.51	66.51
KXG38620	Sorghum	cytosol	66.27	66.11
Zm00001d033046_P002	Maize	cytosol	65.06	64.9
CDY08006	Canola	extracellular	12.77	62.35
Zm00001d014246_P004	Maize	cytosol	66.02	61.44
CDY34906	Canola	mitochondrion	63.86	57.36
Os10t0392700-02	Rice	cytosol, mitochondrion, plastid	45.78	56.55
GSMUA_Achr11P...	Banana	cytosol	13.25	52.88
Bra029637.1-P	Field mustard	cytosol	69.88	38.16
CDY24631	Canola	cytosol	67.95	37.5
PGSC0003DMT400074245	Potato	cytosol	18.31	19.05
PGSC0003DMT400059378	Potato	cytosol, plastid	18.31	12.26
PGSC0003DMT400026040	Potato	cytosol	18.8	12.24

Protein Annotations

EnsemblPlants:PGSC0003DMT400044316	EnsemblPlantsGene:PGSC0003DMG400017207	EntrezGene:102580093	Gene3D:3.40.50.10470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like	KEGG:00270+5.3.1.23	PANTHER:PTHR10233
PANTHER:PTHR10233:SF9	PFAM:PF01008	PGSC:PGSC0003DMG400017207	RefSeq:XP_006354459.1	RefSeq:XP_015167371.1	RefSeq:XP_015167372.1
SEG:seg	SUPFAM:SSF100950	UniParc:UPI00029559EC	UniProt:M1BG00	MapMan:17.4.1.2.3.2	:

Description

Translation initiation factor 2B beta subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400017207]

Coordinates

chr9:+:56733239..56740163

Molecular Weight (calculated)

44864.9 Da

IEP (calculated)

5.904

GRAVY (calculated)

0.025

Length

415 amino acids

Sequence
(BLAST)

001: MPDIERLVND FVAKLSKRKV EGSQATSRLT AELLRSVVSL QRLPPTNSAA VLIEAVSGIG VKLVAANPVE LAVGNIVRRV LHIIREEDLS LLTSKTSDLD
101: LSAASDDEGT IDQDYDPTQS AAAAAAAAKS FLRPPSLHAL LENMSDKAVP SNNYTSSSGG DSEEKTKADK LARTRKLKHD VIEAINILIE DIDTCHDLIA
201: EQAVEHIHQN EVILTLGSSR TAFEFLCAAK EKKRSFRVVV AEGAPRYQGH ALAKELVSRG LQTIVVTDSA VFAMISRVNM VIVGVHAVMA NGGVIAPVGM
301: NMVALAAQKH AVPFVVVAGI HKLCPSYPHN PEVCLNDMRS PAELLEFGRF SNCMEFGMDS GAPLQVVNPG FDYVAPELVS LLITDIGGHN PSYMYRLISD
401: YYSADDFDLQ GRIHK

Best Arabidopsis Sequence Match ( AT3G07300.1 )
(BLAST)

001: MPDVQSTVVE FVNKLRKRKI EGSQATAKYT VELLRSVISH QRVPHANQAA ALIDAVKAVG EQLIAANPVE LAVGNVVRRV LHIIREEDLS LTTAAMGGLD
101: LLDASDDDDV DNCKGIGFPA MSAAVVAAAA RSTLRPPSLQ TLLEGTPESA TVPYTSSSGA DSESKTADKS SLTRKLKHDV IEGVNQLIQE IAGCHEQIAE
201: QAIEHIHQNE VILTLGSSRT VLEFLCAAKE KKRSFRVFVA EGAPRYQGHL LAKELVARGL QTTVITDSAV FAMISRVNMV IIGAHAVMAN GGVIGPVGVN
301: MAALAAQKHA VPFVVLAGSH KLCPLYPHNP EVLLNELRSP SELLDFGEFS DCLDFGAGSG SLQVVNPTFD YVPPNLVSLF ITDTGGHNPS YMYRLIADYY
401: SADDLVM

Arabidopsis Description

AT3G07300 protein [Source:UniProtKB/TrEMBL;Acc:B3H7H1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.