Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g038340.1.1 | Tomato | nucleus | 95.97 | 95.97 |
| Os03t0645200-01 | Rice | cytosol, plastid | 18.39 | 76.0 |
| Zm00001d033223_P003 | Maize | cytosol | 26.29 | 69.96 |
| VIT_17s0000g04230.t01 | Wine grape | plastid | 67.42 | 64.41 |
| KRH03820 | Soybean | cytosol, mitochondrion, nucleus, plasma membrane | 56.61 | 63.47 |
| PGSC0003DMT400026040 | Potato | cytosol | 63.23 | 61.54 |
| TraesCS5B01G376300.1 | Wheat | mitochondrion | 59.19 | 59.87 |
| TraesCS5D01G384000.3 | Wheat | mitochondrion | 59.03 | 59.71 |
| KXG24018 | Sorghum | mitochondrion, plastid | 57.42 | 59.63 |
| TraesCS5A01G374400.3 | Wheat | mitochondrion | 58.55 | 59.22 |
| GSMUA_Achr4P22890_001 | Banana | cytosol | 62.74 | 59.21 |
| GSMUA_Achr7P01240_001 | Banana | cytosol | 61.61 | 59.13 |
| Zm00001d013692_P001 | Maize | cytosol | 57.26 | 58.29 |
| Os12t0617100-01 | Rice | mitochondrion | 56.61 | 57.83 |
| Zm00001d031081_P001 | Maize | endoplasmic reticulum, vacuole | 50.16 | 56.96 |
| KRH54799 | Soybean | plastid | 62.58 | 56.89 |
| HORVU5Hr1G092900.2 | Barley | mitochondrion | 58.06 | 56.51 |
| EER91168 | Sorghum | plastid | 57.42 | 49.31 |
| PGSC0003DMT400074245 | Potato | cytosol | 14.03 | 21.8 |
| PGSC0003DMT400044316 | Potato | cytosol | 12.26 | 18.31 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400059378 | EnsemblPlantsGene:PGSC0003DMG400023069 | EntrezGene:102596631 | Gene3D:3.40.50.10470 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0044237 | InterPro:IF-2B-related | InterPro:NagB/RpiA_transferase-like | KEGG:00270+5.3.1.23 | PANTHER:PTHR10233 |
| PANTHER:PTHR10233:SF27 | PFAM:PF01008 | PGSC:PGSC0003DMG400023069 | RefSeq:XP_006345335.1 | SEG:seg | SUPFAM:SSF100950 |
| UniParc:UPI00029674BA | UniProt:M1C466 | MapMan:17.4.1.2.3.4 | : | : | : |
Description
Translation initiation factor 2b, delta subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400023069]
Coordinates
chr12:-:43548544..43555762
Molecular Weight (calculated)
68570.3 Da
IEP (calculated)
9.352
GRAVY (calculated)
-0.353
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPRRPSRLI DPKVRRVGFF APDPDNHPGF ASSPSGNSSS PAMIPHAFDS VSQAVPVPNS TLSRPRRTSF DESEQLVVGS YNPMQSVLGT SPASSGIGVD
101: GEFSEDSSQW VRLTDGFGLT SPAISMTELK DDQDTSGMER VNALVAETPT EVERNAKSLK EKTTKAERRA LQETQRAAKA SGKAGEKSVV KLHGQSGKPA
201: KQPPQKKDGG QMMSSAAISE TKGGDRPPEK DRKKDVPAPR MQFDDKNRVE KAKKRALVKK IEARNRVELF RHLPQYEQGT QLPDLESRFF HLDTMHPAVY
301: KVGLQYLAGD VVGANARCVA MLQAFQQAIK DYSTPREKAL GRDLTARISG YVSFLNECRP LSISMGNAIR FLKARITKLS LTLSESEAKA ALYSDIERFM
401: NEKIVLAGRV ITRQAVMKIR DGDVLLTYGS SSVVEMILLH AYELGKQFRV IVVDSRPKFE GRALLRRLVR KGLSCTYTHI NAVSYIMHEV SRVFMGAESV
501: LSNGTVYSGI GTACVAMVAH AFRVPLLICC EAYKFHERVQ LDSVCSNELG DPDVISKVPG RLDVNYLDNW TSNDNIQLLN LMYDATPSDY ISMIITDYGM
601: IPTTSVPVIV REYGREHLLI
101: GEFSEDSSQW VRLTDGFGLT SPAISMTELK DDQDTSGMER VNALVAETPT EVERNAKSLK EKTTKAERRA LQETQRAAKA SGKAGEKSVV KLHGQSGKPA
201: KQPPQKKDGG QMMSSAAISE TKGGDRPPEK DRKKDVPAPR MQFDDKNRVE KAKKRALVKK IEARNRVELF RHLPQYEQGT QLPDLESRFF HLDTMHPAVY
301: KVGLQYLAGD VVGANARCVA MLQAFQQAIK DYSTPREKAL GRDLTARISG YVSFLNECRP LSISMGNAIR FLKARITKLS LTLSESEAKA ALYSDIERFM
401: NEKIVLAGRV ITRQAVMKIR DGDVLLTYGS SSVVEMILLH AYELGKQFRV IVVDSRPKFE GRALLRRLVR KGLSCTYTHI NAVSYIMHEV SRVFMGAESV
501: LSNGTVYSGI GTACVAMVAH AFRVPLLICC EAYKFHERVQ LDSVCSNELG DPDVISKVPG RLDVNYLDNW TSNDNIQLLN LMYDATPSDY ISMIITDYGM
601: IPTTSVPVIV REYGREHLLI
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
Arabidopsis Description
At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.