CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0645200-01	Rice	cytosol, plastid	20.98	77.33
Zm00001d033223_P003	Maize	cytosol	30.38	72.1
KRH54799	Soybean	plastid	71.43	57.92
VIT_17s0000g04230.t01	Wine grape	plastid	67.45	57.47
KXG24018	Sorghum	mitochondrion, plastid	61.84	57.29
KRH01494	Soybean	nucleus	65.28	56.76
PGSC0003DMT400059378	Potato	cytosol, plastid	63.47	56.61
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	55.33	56.04
Solyc12g038340.1.1	Tomato	nucleus	62.21	55.48
KRG93828	Soybean	endoplasmic reticulum, nucleus	66.18	55.45
Zm00001d013692_P001	Maize	cytosol	60.94	55.34
KRH18264	Soybean	cytosol	65.64	55.08
TraesCS5D01G384000.3	Wheat	mitochondrion	60.94	54.98
TraesCS5B01G376300.1	Wheat	mitochondrion	60.94	54.98
GSMUA_Achr4P22890_001	Banana	cytosol	64.56	54.34
TraesCS5A01G374400.3	Wheat	mitochondrion	60.22	54.32
GSMUA_Achr7P01240_001	Banana	cytosol	62.93	53.87
Os12t0617100-01	Rice	mitochondrion	58.41	53.21
HORVU5Hr1G092900.2	Barley	mitochondrion	60.22	52.28
EER91168	Sorghum	plastid	61.48	47.09
KRH47707	Soybean	cytosol	15.73	25.07
KRH69015	Soybean	cytosol	16.64	24.08
KRG97288	Soybean	extracellular	16.09	22.47
KRH39206	Soybean	cytosol	14.1	18.8
KRH48472	Soybean	endoplasmic reticulum	13.92	18.55
KRH30036	Soybean	cytosol	13.92	18.55

Protein Annotations

KEGG:00270+5.3.1.23	EntrezGene:100795256	MapMan:17.4.1.2.3.4	Gene3D:3.40.50.10470	EMBL:ACUP02010363	ncoils:Coil
EnsemblPlantsGene:GLYMA_17G122100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0044237	UniProt:I1MUH1	InterPro:IF-2B-related	EnsemblPlants:KRH03820
ProteinID:KRH03820	ProteinID:KRH03820.1	InterPro:NagB/RpiA_transferase-like	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF27
MetaCyc:PWY-4361	MetaCyc:PWY-7174	SUPFAM:SSF100950	UniParc:UPI000233E4F7	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:9774397..9778768

Molecular Weight (calculated)

61211.5 Da

IEP (calculated)

9.027

GRAVY (calculated)

-0.302

Length

553 amino acids

Sequence
(BLAST)

001: MDAPRVSRAI GDPKIRRVGF FASDSSATDS LMIPSPRHRS IPVPPTHPSG DRHVASGSYD PTEYPKLATG IEKRGEEEEE KEVLQSSLKP LKAKTTKAER
101: RALQEAQRAA KAASKDEGSK AVAESGRGTP GKSTKQSSQK KGGPSCVSPV ATDKNAGNRP LDKDRKMDAP SPRMQFDDKS RLEKARRCAV VNPTESRNKV
201: ELFQHLPQYE YGTQLPNLES KFFQIGSVHP AVFEVGLRYS AGDISGGNAR CIAMLRAFQD AIRDYCTPHE KVLVRDLASK ISSYVSFFTE CRPLSMSMGN
301: AIRFVKSRIV NLTLNHSEFE AKTTLCSDID RFINEKIILA DKVIVRHAFT KVKDGDVLLT YGLSCVVEMI LLYAYEQGKK FRVVVVDSRP RLEGQALLRR
401: LVAKGLSCTY THINAVSYIM HEVTRVLLGA SAVLSNGTVY SRVGTSCVAM VAHAFHVPVL ICCEAYKFHE RVQLDSICSN ELGDPDAIAR VPGRMDVSYL
501: SNWASEDNLR LLNLMYDATP SDYVSVIVTD YGMLPPTSVP VIVREYGREH LLM

Best Arabidopsis Sequence Match ( AT1G48970.1 )
(BLAST)

001: MDTRRGALAV PKVRRVGFFT SIEPPPESSL QRPNRSQSGP VDATTSSSPL SDSPSGNLIS PVLIPPSRHH SDNLTSRVAA AAAAPVPVPG PAAFRRYLTP
101: ERTLLHVGSY NPPDSLLGTS SPSSNGGLSE DSASLFGFQR SDSTKLSASL PNGGFDLTLA VRAPQESETK IATTSASQGK KKIAEVSGKS ESATTKPQKE
201: KEPKALKDKT TKAERRAIQE AQRAAKAAAK GEGSRRADES GRANPGKAAI KPQPKKERLP VTSSVSEKTA VAVEKEKRMD VPQTQMQYDD KSRVDKAKRR
301: AVVEQTESKN KVELFLHLPQ YERSNQLPNL SSNFFTLDSI HHAVYKVGLQ HLAGDISGDN ARCIAMLQAF QEAIEDYSTP PMKDLTMDLT AKINGYVSFL
401: IECRPLSMSM GNAIRFLKNQ IRKLPVNLSE SEAKSSLCSD IGRFIDEKTI IADKAIVQHA VTKIRDGEVL LTYGFSCVVE MILLYAHEIG KKFRVVIVDS
501: RPNLEGQKLL RRLVTRGLDC TYTHINAISY IMREATRVFL GASSIYSNGT LYARVGTSCI AMVANAFSVP VIVCCEAYKF HERVLLDSIC SNELGDPDAV
601: ANIPSFRTNA KHSKTMDNNK NLQFLNLMYD STPSEYISMI VSDYGMIPPT SIPVIVREYR RENLLL

Arabidopsis Description

NagB/RpiA/CoA transferase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I048]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.