Factsheet for Os12t0617100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0621300-01
Os02t0258300-01
Os02t0656300-01
Os02t0662700-01
Os02t0663100-01
Os02t0747400-01
Os02t0770800-01
Os03t0103400-01
Os04t0555000-01
Os05t0586400-01
Os06t0105350-00
Os06t0226700-01
Os06t0524300-01
Os06t0679100-00
Os08t0468100-01
Os08t0468700-00
Os10t0551200-01
Os11t0311300-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38640.1	Os01t0621300-01	AT1G01440.1	21798944
AT5G38640.1	Os02t0258300-01	AT1G01440.1	21798944
AT5G38640.1	Os05t0586400-01	AT1G01440.1	21798944
AT5G38640.1	Os06t0524300-01	AT1G01440.1	21798944
AT5G38640.1	Os02t0770800-01	AT1G37130.1	21798944
AT5G38640.1	Os08t0468100-01	AT1G37130.1	21798944
AT5G38640.1	Os08t0468700-00	AT1G37130.1	21798944
AT5G38640.1	Os11t0311300-03	AT1G60080.1	21798944
AT5G38640.1	Os02t0747400-01	AT3G47620.1	21798944
AT5G38640.1	Os06t0226700-01	AT3G47620.1	21798944
AT5G38640.1	Os02t0656300-01	AT3G48150.1	21798944
AT5G38640.1	Os06t0679100-00	AT3G48150.1	21798944
AT5G38640.1	Os02t0662700-01	AT4G00150.1	21798944
AT5G38640.1	Os02t0663100-01	AT4G00150.1	21798944
AT5G38640.1	Os03t0103400-01	AT4G00150.1	21798944
AT5G38640.1	Os04t0555000-01	AT4G00150.1	21798944
AT5G38640.1	Os06t0105350-00	AT4G00150.1	21798944
AT5G38640.1	Os10t0551200-01	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0645200-01	Rice	cytosol, plastid	20.92	84.67
KXG24018	Sorghum	mitochondrion, plastid	73.81	75.04
AT2G44070.1	Thale cress	cytosol	39.54	72.07
Zm00001d031081_P001	Maize	endoplasmic reticulum, vacuole	64.25	71.43
VIT_14s0083g00170.t01	Wine grape	cytosol	57.17	70.53
GSMUA_Achr4P22890_001	Banana	cytosol	67.22	62.1
GSMUA_Achr7P01240_001	Banana	cytosol	64.74	60.84
CDY49077	Canola	cytosol, plastid	50.74	60.04
KRH03820	Soybean	cytosol, mitochondrion, nucleus, plasma membrane	53.21	58.41
Bra028196.1-P	Field mustard	nucleus	60.46	58.25
CDX74513	Canola	nucleus	60.3	58.1
KRH01494	Soybean	nucleus	60.79	58.02
CDY01647	Canola	cytosol	59.97	57.87
PGSC0003DMT400026040	Potato	cytosol	60.63	57.77
Solyc02g089810.2.1	Tomato	nucleus	60.13	57.3
AT5G38640.1	Thale cress	cytosol	60.46	57.17
VIT_17s0000g04230.t01	Wine grape	plastid	60.96	57.01
KRG93828	Soybean	endoplasmic reticulum, nucleus	61.94	56.97
PGSC0003DMT400059378	Potato	cytosol, plastid	57.83	56.61
CDY27424	Canola	cytosol	11.2	55.74
KRH18264	Soybean	cytosol	60.3	55.54
Solyc12g038340.1.1	Tomato	nucleus	56.51	55.32
CDX77270	Canola	mitochondrion	54.7	50.53
CDY16477	Canola	mitochondrion	54.53	50.38
Bra014165.1-P	Field mustard	mitochondrion	54.37	50.23
KRH54799	Soybean	plastid	54.86	48.83
AT1G48970.1	Thale cress	mitochondrion	53.21	48.5
Os12t0497400-01	Rice	cytosol	13.67	21.84
Os10t0392700-02	Rice	cytosol, mitochondrion, plastid	8.73	15.77

Protein Annotations

KEGG:00270+5.3.1.23	MapMan:17.4.1.2.3.4	Gene3D:3.40.50.10470	EntrezGene:4352805	ProteinID:ABA99867.1	ProteinID:ABA99868.1
ProteinID:BAF30306.1	ProteinID:BAT18106.1	ncoils:Coil	ProteinID:EEE53619.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0044237	InterPro:IF-2B-related	InterPro:NagB/RpiA_transferase-like
EnsemblPlantsGene:Os12g0617100	EnsemblPlants:Os12t0617100-01	PFAM:PF01008	PANTHER:PTHR10233	PANTHER:PTHR10233:SF29	UniProt:Q2QM52
SUPFAM:SSF100950	UniParc:UPI0000680C18	RefSeq:XP_015620091.1	RefSeq:XP_015620092.1	RefSeq:XP_015620093.1	SEG:seg

Description

Similar to Translation initiation factor eIF-2B delta subunit (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD2) (GCD complex subunit GCD2). (Os12t0617100-01)

Coordinates

chr12:-:26215882..26221809

Molecular Weight (calculated)

66588.7 Da

IEP (calculated)

7.822

GRAVY (calculated)

-0.283

Length

607 amino acids

Sequence
(BLAST)

001: MDLRRPTTRS SSGGVEPRYR QVGFVTTTAE PAAAAASSSS SPRGSDVYPG SLSPVMIPPP RIPDHLTALS PAPVSLLPSS PPPPSSSRLD AAESDLDDDD
101: DDDVDVSWAR PPPPALLESK EGLPDTQNEG APAPAPVQQK QKLSKAERRA IQEAQRAAKA SAKEAGLSRK SVATVSTSNA AMSKQLKTVK TPPKKDLPQL
201: TPPVASEKKT SEHPPDRDRK KDVPPPRMQF DNVHRVEKTK KHSLVNQAEA QNRVELFRHL PQYVHGTQLP DLESKFFHLD LMHPSVYKVG LQFLSGVISG
301: GNACCVAMLL AFREAIKDYS TPSTKTLNRD LTAKISSYVS FLIECKPLSI SMGNAIRFLK NRIAKLLLTL SESEAKASLQ SDIDRFINEK IIIADHVIVS
401: HAIAKVRDDD VLLTYASSSV VEMIFDHANE LGKKFRVVVV DSRPNNEGQA LLHRLVAKGI SCTYTHINAI SYIMHEVTRV FLGASSILSN GAVYSSVGTA
501: AVAMVAHAFG VPVLVCCEAY KLHERVQLDS ICSNELGDPD VISRVPERED LCHLKNCTYN ENLQLLNLKY DTMPSDYVSM IITEYGMLPP TSVPVIVREY
601: RREHIWI

Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)

001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV

Arabidopsis Description

At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.