Factsheet for Os03t0103400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0809300-01
Os05t0180600-02
Os07t0264800-01
Os08t0307400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	Os07t0264800-01	AT1G72030.1	21798944
AT4G00150.1	Os05t0180600-02	AT1G60490.1	21798944
AT4G00150.1	Os08t0307400-02	AT1G60490.1	21798944
AT4G00150.1	Os03t0809300-01	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027292_P001	Maize	peroxisome	59.28	58.42
Os10t0551200-01	Rice	cytosol	48.73	58.04
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	60.55	44.98
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	59.92	44.58
TraesCS4D01G360200.1	Wheat	cytosol	59.92	44.24
TraesCS4B01G367300.1	Wheat	cytosol	59.7	44.08
Os06t0105350-00	Rice	plastid	36.71	35.58
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	13.5	35.16
GSMUA_Achr11P...	Banana	cytosol	38.61	30.76
VIT_02s0154g00400.t01	Wine grape	cytosol	32.91	30.47
Os04t0555000-01	Rice	cytosol	44.94	29.96
Solyc08g078800.1.1	Tomato	plastid	29.96	29.96
GSMUA_Achr5P20860_001	Banana	cytosol	34.81	29.78
Os02t0662700-01	Rice	cytosol	44.3	29.62
Os02t0663100-01	Rice	cytosol	44.3	29.37
GSMUA_Achr8P11160_001	Banana	cytosol	39.03	27.74
AT4G00150.1	Thale cress	cytosol, plastid	32.49	27.6
Bra003311.1-P	Field mustard	nucleus	28.9	27.08
CDY63061	Canola	cytosol, plastid	31.01	26.16
CDY63062	Canola	cytosol, plastid	31.01	26.16
Bra037319.1-P	Field mustard	cytosol, plastid	31.01	26.16
GSMUA_Achr11P...	Banana	cytosol	37.97	26.01
CDX95633	Canola	cytosol	28.69	24.55
CDY48367	Canola	cytosol	28.9	24.29
CDX89065	Canola	nucleus	28.06	24.18
CDX83398	Canola	cytosol	29.54	23.73
AT3G60630.1	Thale cress	cytosol	31.01	23.6
CDY67934	Canola	cytosol	29.75	23.58
CDY56248	Canola	cytosol	29.54	23.29
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	37.13	22.92
Bra000375.1-P	Field mustard	cytosol	29.32	22.9
Solyc01g090950.2.1	Tomato	cytosol	37.13	22.89
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	37.13	22.71
AT2G45160.1	Thale cress	cytosol	30.38	22.5
PGSC0003DMT400012104	Potato	plastid	32.7	22.14
KRH76167	Soybean	cytosol	33.97	21.85
KRG88927	Soybean	cytosol	33.97	21.61
Os11t0160550-00	Rice	cytosol	20.89	21.48
KRH65380	Soybean	cytosol	33.12	21.45
KRH75351	Soybean	cytosol	33.54	21.37
Os03t0263300-01	Rice	cytosol	22.57	18.61
Os12t0162700-00	Rice	nucleus	11.18	14.36
Os11t0160600-01	Rice	cytosol	0.21	2.0

Protein Annotations

MapMan:15.5.12	EntrezGene:4331304	ProteinID:BAF10583.1	ProteinID:BAS81848.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	InterPro:IPR005202	EnsemblPlantsGene:Os03g0103400
EnsemblPlants:Os03t0103400-01	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF34	UniProt:Q0DW05
InterPro:TF_GRAS	UniParc:UPI0000E11EBF	RefSeq:XP_015629082.1	SEG:seg	:	:

Description

GRAS transcription factor domain containing protein. (Os03t0103400-01)

Coordinates

chr3:+:235340..238039

Molecular Weight (calculated)

51059.6 Da

IEP (calculated)

6.677

GRAVY (calculated)

0.003

Length

474 amino acids

Sequence
(BLAST)

001: GELAASSSSF TLTSPGLRPP THAASTPPPP PWLDDADHHH DNAFLHWVIN DHHHPLLDLD DVDLDYAKPA PFFFADRGLH HHHPASSSFP NPKPTADDNT
101: STVEQLVQAA KLTEAGDVLA ARHILARPAI NYRLPASAAP PLLRSALYFK DALRRALISD DDSSSSSTPP PPLHEPHPHD LLLKLTSYKS FSDLSPLLHF
201: AHFTCVQAVL DELAPSASCI HLLDFDIGVG EQWASLMHDL AHRHPGVALK VTALNVTASS SSHHPLQLQL IHDTLSTFAA DLSVPFRFAA FNLDATDLTP
301: LLAVAAATDA IAVHLPVGSV HATAVPSVLH LVRRLGAKLV VSVDRGCDRG ELPFAAHLLQ ALRSTVSLLE SLDAMGTDSD VAAKIERFWV QPKIQECVRA
401: AVGVGGDKTA ASAWRATLAS AGFVPVQVSS MAEAQAESLL KKLPVRGFRL ERRAGSLFLH WQRGELASVS AWRC

Best Arabidopsis Sequence Match ( AT2G45160.1 )
(BLAST)

001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC

Arabidopsis Description

SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.