Factsheet for TraesCS4D01G360200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G054400.1
TraesCS5A01G124000.1
TraesCS5B01G062000.3
TraesCS5B01G123600.1
TraesCS5D01G065700.1
TraesCS5D01G131900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	TraesCS5A01G124000.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5B01G123600.1	AT1G72030.1	21798944
AT3G60630.1	TraesCS5D01G131900.1	AT1G72030.1	21798944
AT4G00150.1	TraesCS5A01G054400.1	AT1G60490.1	21798944
AT4G00150.1	TraesCS5B01G062000.3	AT1G60490.1	21798944
AT4G00150.1	TraesCS5D01G065700.1	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	96.42	97.17
TraesCS4B01G367300.1	Wheat	cytosol	96.26	96.26
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	90.81	91.38
Zm00001d027292_P001	Maize	peroxisome	51.87	69.23
TraesCS1D01G212800.1	Wheat	cytosol	59.19	61.19
Os03t0103400-01	Rice	cytosol	44.24	59.92
GSMUA_Achr11P...	Banana	cytosol	37.69	40.67
TraesCS7D01G011400.1	Wheat	plastid	33.64	40.6
GSMUA_Achr5P20860_001	Banana	cytosol	33.18	38.45
VIT_02s0154g00400.t01	Wine grape	cytosol	30.37	38.09
TraesCS6D01G229400.1	Wheat	mitochondrion	41.28	37.48
GSMUA_Achr8P11160_001	Banana	cytosol	38.94	37.48
Solyc08g078800.1.1	Tomato	plastid	26.79	36.29
GSMUA_Achr11P...	Banana	cytosol	37.38	34.68
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	9.81	34.62
AT4G00150.1	Thale cress	cytosol, plastid	29.28	33.69
CDY63062	Canola	cytosol, plastid	28.19	32.21
CDY63061	Canola	cytosol, plastid	28.19	32.21
Bra037319.1-P	Field mustard	cytosol, plastid	28.19	32.21
Bra003311.1-P	Field mustard	nucleus	24.61	31.23
CDX95633	Canola	cytosol	26.64	30.87
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	36.29	30.06
CDX89065	Canola	nucleus	25.7	30.0
CDY67934	Canola	cytosol	27.88	29.93
Solyc01g090950.2.1	Tomato	cytosol	35.83	29.91
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	35.67	29.82
CDX83398	Canola	cytosol	27.26	29.66
CDY48367	Canola	cytosol	25.7	29.26
KRG88927	Soybean	cytosol	33.8	29.13
Bra000375.1-P	Field mustard	cytosol	27.26	28.83
CDY56248	Canola	cytosol	26.95	28.79
KRH75351	Soybean	cytosol	33.33	28.76
AT3G60630.1	Thale cress	cytosol	27.88	28.73
KRH76167	Soybean	cytosol	32.87	28.63
KRH65380	Soybean	cytosol	31.93	28.01
AT2G45160.1	Thale cress	cytosol	27.88	27.97
PGSC0003DMT400012104	Potato	plastid	30.22	27.71
TraesCS4D01G110800.1	Wheat	cytosol	16.98	23.0
TraesCS4D01G216200.1	Wheat	cytosol	16.98	19.43

Protein Annotations

EnsemblPlants:TraesCS4D01G360200.1	EnsemblPlantsGene:TraesCS4D01G360200	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF34
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr4D:+:507271811..507273739

Molecular Weight (calculated)

68020.7 Da

IEP (calculated)

6.379

GRAVY (calculated)

-0.131

Length

642 amino acids

Sequence
(BLAST)

001: MPTQQLTTFQ LLPPAHAHGD RRQYQYQHHH QDQQQQLACG GGGGGLWDPA SVLDRRASPA AHPTLSSPSP LPAGVAALAK NVSAAPPAQA WPPPPGPGAN
101: DDDAKDDWVH HLPPLDMAGW GDPHAAAMQE PHPPPSSQDS TFLRWIIGGG DDDDDDSGAA MDGADPPDLD LDRISMLPRH PPLMGGTGHG LPFTLAGEDT
201: KQQFRPSPGA ALHQQQHHLP HAFHGGAFPS FDPAKRQQQQ QHPMAGAAPP KQPPFAGHGA AAALKPKAEA PADDGAAAAA VDQLTEAARL VEAGDAYGAR
301: EILARLNHRL PAAPAAGTPL LRSAFYFKEA LSVALDTTGA HASSAAVAST PVDVLLKLGA YKAFSELSPV LQFAHFTCVQ AVLDELGGAG CIHVLDFDIG
401: VGEQWASLMQ ELAQRRPGAA LKVTALVLPS THHPLELQLI HENLANFAAE LGVPFQFVVF NLDSVDPTEL LAIAGGDAIA VHLPVGSVHA AAVPSVLHLV
501: RRLGAKLVIS VDRSGDRGEL PFAAHLLQAF QSCAFLLESL DAVGTEPDVA SKIERFLIQP KIESCVIRRH QAATAGDKLL PWRTMFTSAG FVPVHISNFA
601: EAQADSLLKK VPVRGFRVEK RAGSLVLHWQ RAELVSVSAW RC

Best Arabidopsis Sequence Match ( AT2G45160.1 )
(BLAST)

001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC

Arabidopsis Description

SCL27Scarecrow-like protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJM8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.