Factsheet for GSMUA_Achr8P11160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P21120_001
GSMUA_Achr3P21890_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	GSMUA_Achr3P21890_001	AT1G72030.1	21798944
AT4G00150.1	GSMUA_Achr1P21120_001	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	69.57	77.98
GSMUA_Achr5P20860_001	Banana	cytosol	58.32	70.22
GSMUA_Achr11P...	Banana	cytosol	64.02	61.71
Zm00001d022034_P001	Maize	cytosol	25.34	55.23
Os10t0551200-01	Rice	cytosol	30.88	51.76
GSMUA_Achr6P36740_001	Banana	cytosol	35.83	50.1
GSMUA_Achr1P05940_001	Banana	plastid	39.58	50.0
Zm00001d035873_P001	Maize	cytosol, plastid	19.34	45.1
Zm00001d047957_P001	Maize	cytosol	8.4	43.41
Zm00001d027292_P001	Maize	peroxisome	31.03	43.04
VIT_02s0154g00400.t01	Wine grape	cytosol	32.53	42.38
HORVU1Hr1G053510.1	Barley	plastid	38.53	41.45
TraesCS1D01G212800.1	Wheat	cytosol	38.23	41.06
TraesCS1A01G209400.1	Wheat	mitochondrion, plastid	38.38	40.96
TraesCS1B01G223400.1	Wheat	cytosol, plastid	38.23	40.87
Zm00001d045589_P001	Maize	cytosol	30.43	40.6
Os04t0555000-01	Rice	cytosol	43.18	40.51
Solyc08g078800.1.1	Tomato	plastid	28.64	40.3
TraesCS6B01G277400.1	Wheat	mitochondrion	42.13	40.14
TraesCS6D01G229400.1	Wheat	mitochondrion	42.43	40.03
EER91968	Sorghum	cytosol, mitochondrion	38.38	40.0
EES11245	Sorghum	cytosol, nucleus, peroxisome	43.18	40.0
Os02t0662700-01	Rice	cytosol	42.43	39.92
TraesCS6A01G247200.1	Wheat	mitochondrion	42.13	39.91
Os02t0663100-01	Rice	cytosol	42.73	39.86
Zm00001d002718_P001	Maize	cytosol	43.03	39.81
EES05768	Sorghum	cytosol	42.73	39.8
EER87695	Sorghum	cytosol, plastid	30.43	39.57
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	10.79	39.56
Zm00001d029855_P001	Maize	mitochondrion	38.23	39.53
TraesCS7D01G011400.1	Wheat	plastid	31.48	39.47
AT4G00150.1	Thale cress	cytosol, plastid	32.98	39.43
Zm00001d017513_P001	Maize	cytosol, mitochondrion, nucleus	41.38	39.09
Os03t0103400-01	Rice	cytosol	27.74	39.03
Zm00001d051387_P001	Maize	cytosol	41.38	38.98
HORVU6Hr1G063650.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	41.08	38.98
TraesCS4D01G360200.1	Wheat	cytosol	37.48	38.94
TraesCS5A01G535000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	37.18	38.93
Os06t0105350-00	Rice	plastid	28.49	38.85
CDY63061	Canola	cytosol, plastid	32.68	38.79
CDY63062	Canola	cytosol, plastid	32.68	38.79
Bra037319.1-P	Field mustard	cytosol, plastid	32.68	38.79
TraesCS4B01G367300.1	Wheat	cytosol	37.18	38.63
Zm00001d026158_P001	Maize	cytosol	41.53	38.58
HORVU4Hr1G087700.2	Barley	cytosol, mitochondrion, peroxisome, plastid	36.43	38.09
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	44.23	38.06
TraesCS4A01G482000.1	Wheat	plastid	30.58	37.57
Zm00001d027569_P001	Maize	plastid	17.54	37.38
TraesCS7A01G014200.1	Wheat	plastid	31.33	35.97
Zm00001d018956_P001	Maize	plastid	7.65	35.66
CDX89065	Canola	nucleus	29.09	35.27
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	40.48	35.16
Solyc01g090950.2.1	Tomato	cytosol	40.48	35.11
CDX95633	Canola	cytosol	29.09	35.02
PGSC0003DMT400012104	Potato	plastid	36.58	34.86
CDY48367	Canola	cytosol	29.24	34.57
Bra003311.1-P	Field mustard	nucleus	25.94	34.19
AT3G60630.1	Thale cress	cytosol	31.78	34.03
Zm00001d042852_P001	Maize	cytosol	12.44	33.74
KRH75351	Soybean	cytosol	37.48	33.6
CDY67934	Canola	cytosol	29.98	33.44
CDY56248	Canola	cytosol	29.98	33.28
KRG88927	Soybean	cytosol	37.03	33.15
Zm00001d002023_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	17.54	33.05
AT2G45160.1	Thale cress	cytosol	31.48	32.81
CDX83398	Canola	cytosol	28.94	32.71
Bra000375.1-P	Field mustard	cytosol	29.39	32.29
KRH76167	Soybean	cytosol	35.53	32.16
OQU85680	Sorghum	mitochondrion	31.03	31.99
Zm00001d022162_P001	Maize	cytosol	7.8	31.52
KRH65380	Soybean	cytosol	34.03	31.01
GSMUA_Achr3P29970_001	Banana	cytosol	24.44	30.7
Zm00001d031615_P001	Maize	cytosol	12.44	30.51
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	22.49	28.09
GSMUA_Achr4P07190_001	Banana	plastid	21.29	27.2
GSMUA_Achr1P26740_001	Banana	cytosol	17.24	21.74

Protein Annotations

EnsemblPlants:GSMUA_Achr8P11160_001	EnsemblPlants:GSMUA_Achr8T11160_001	EnsemblPlantsGene:GSMUA_Achr8G11160_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF52	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000296574A
UniProt:M0TPG9	MapMan:15.5.12	:	:	:	:

Description

scarecrow, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G11160_001]

Coordinates

chr8:-:8064828..8067188

Molecular Weight (calculated)

72674.4 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.112

Length

667 amino acids

Sequence
(BLAST)

001: MRGLPYHGQG KGGLEAVETI FEGNQALFWV NKRPKLVIQQ GREPRSVLDH RSPSPPTSTA TLSSSLGGGS SDTAGVAAVS DIPTNKWVLA DSTAEVSGGA
101: VGKEEWAAEL QPIPTGLDMG FVAGGEKCGL GVDDWEAILS ETSAASPGRE QTFFRWIMGD VDDPSAAGTA DEASVSAPTD SSLPLSSNVA SGGGFSLAGN
201: SISSPLSLPQ GMYFPDTLKR HPAIADQIPQ KLPFLDSAAN SDLFLRRQSY QQQSHGFPLR QLQNRSVKPK VAAFVDDVTS AVAAQQLHLQ HALADLLFEA
301: AKMVEARNFV GAHGILARLN HQLPSPSPSG KPLIRSAFYF KEALQLILSN GSNTILSATP TSHRQQSTFS APLMTHLDVV HKLNAYKAFS EVSPIIQFSN
401: FTCIQALLEE LDGCDRIHIM DFDIGFGGQW SSFMQELAQR RCSSAGAVRM LKITVFVSHY SHNNMELHLI QDNLSHFASD LNIPFELKVR SLDSFDPLEL
501: HGLGGEAIAV NLPIGSANLS FPVLLRLVKQ LSPKIVVSVD QGCDRSDLPF LQHFLHAFQS SLVLMDSIDA SGTNQDTASK IERFLLQPKI ESSVLGRYCA
601: ADKMLPWRTL FETAGFVPIQ FSNFTETQAE CLLKRVQIRG FHVEKRQASL YLYWQRKELV SVSAWRG

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.