Factsheet for GSMUA_Achr3P29970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	73.63	73.22
GSMUA_Achr4P07190_001	Banana	plastid	62.9	63.98
CDY13032	Canola	cytosol	33.52	36.11
Bra028100.1-P	Field mustard	cytosol	33.33	36.05
CDY43895	Canola	cytosol	33.33	36.05
KRH28630	Soybean	plastid	34.27	35.27
KRH76844	Soybean	plastid	34.27	34.67
VIT_04s0023g01380.t01	Wine grape	plastid	35.03	34.57
CDX72597	Canola	cytosol	29.94	34.49
CDX69238	Canola	cytosol	31.45	34.15
CDX75590	Canola	cytosol	31.26	34.09
KRH69945	Soybean	plastid	33.15	33.65
AT4G36710.1	Thale cress	cytosol	30.7	33.54
KRH08304	Soybean	plastid	33.33	32.78
Solyc02g085600.1.1	Tomato	plastid	32.77	32.46
PGSC0003DMT400033037	Potato	plastid	32.58	31.74
GSMUA_Achr6P36740_001	Banana	cytosol	26.18	29.14
GSMUA_Achr1P05940_001	Banana	plastid	27.31	27.46
GSMUA_Achr5P20860_001	Banana	cytosol	28.06	26.9
GSMUA_Achr11P...	Banana	cytosol	30.13	26.89
GSMUA_Achr8P11160_001	Banana	cytosol	30.7	24.44
Bra011700.1-P	Field mustard	cytosol	31.07	23.84
GSMUA_Achr11P...	Banana	cytosol	28.81	22.11
GSMUA_Achr1P26740_001	Banana	cytosol	20.72	20.79

Protein Annotations

EnsemblPlants:GSMUA_Achr3P29970_001	EnsemblPlants:GSMUA_Achr3T29970_001	EnsemblPlantsGene:GSMUA_Achr3G29970_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000294845D
UniProt:M0SJ13	MapMan:15.5.12	:	:	:	:

Description

Putative Scarecrow-like protein 15 [Source:GMGC_GENE;Acc:GSMUA_Achr3G29970_001]

Coordinates

chr3:+:28884259..28885854

Molecular Weight (calculated)

56227.3 Da

IEP (calculated)

6.114

GRAVY (calculated)

0.049

Length

531 amino acids

Sequence
(BLAST)

001: MKHPKALTDS PQQHQQPPTH HHFSLTSKPL LDSSPTVDSN NVSVAALDDE PTSVLDHHLT SSPATAPTAA PTAAASAAAA DLPFLSWAGG GDAHHHHPLL
101: SSDDWDTASL LFAERCDLPP FTDDSDPQFL DAPFDLPFDP FAAAADHAIP SPASSFDRAQ LDLLISAARC LEANDFATAH VILSRLNHHL PSAGASPLLR
201: AVFLFKEALL ALLRPSTAEP LLSAAELVRH IAAHKAFADL SPVPHFATFT ATQTVIEALD CGARSIHLID FDLGLGGQWS SFAQELAGRS RVSRSSPPAV
301: RITAVVAEES GETVLAADNL RDFARGLNIS LAVNFVRVGG LGTLALSGFR LAGSGEPTAV VLTPAIFRLL GCGAASPDTA AALLRFVRRV CPRVVVFVDT
401: EGGSGGHPPP SLRRTVAAGV EHYATVLESV EAAAAETGAR EDTVRWVERA VMRPRVAAAV GEWAAGLGPW RELFAAAGWS PLPFSEFAES QAEWLVRRTP
501: VGGYHVARRE GGALVLSWRG REMASTSAWR C

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.