Factsheet for GSMUA_Achr6P36740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P21120_001
GSMUA_Achr3P21890_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60630.1	GSMUA_Achr3P21890_001	AT1G72030.1	21798944
AT4G00150.1	GSMUA_Achr1P21120_001	AT1G60490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P05940_001	Banana	plastid	72.33	65.34
VIT_02s0154g00400.t01	Wine grape	cytosol	47.8	44.53
Solyc08g078800.1.1	Tomato	plastid	42.14	42.41
Bra014479.1-P	Field mustard	cytosol, peroxisome, plastid	15.51	40.66
GSMUA_Achr11P...	Banana	cytosol	48.22	38.66
GSMUA_Achr5P20860_001	Banana	cytosol	42.35	36.46
GSMUA_Achr8P11160_001	Banana	cytosol	50.1	35.83
Bra003311.1-P	Field mustard	nucleus	37.11	34.98
GSMUA_Achr11P...	Banana	cytosol	48.43	33.38
AT4G00150.1	Thale cress	cytosol, plastid	36.48	31.18
Bra037319.1-P	Field mustard	cytosol, plastid	36.27	30.78
CDY63061	Canola	cytosol, plastid	36.27	30.78
CDY63062	Canola	cytosol, plastid	36.27	30.78
CDX95633	Canola	cytosol	34.8	29.96
CDY56248	Canola	cytosol	36.69	29.12
VIT_15s0048g00270.t01	Wine grape	extracellular, golgi, mitochondrion, nucleus	47.17	29.03
CDY67934	Canola	cytosol	36.27	28.93
PGSC0003DMT400012104	Potato	plastid	42.35	28.86
CDX83398	Canola	cytosol	35.43	28.64
Bra000375.1-P	Field mustard	cytosol	35.64	28.01
CDX89065	Canola	nucleus	32.29	28.0
Solyc01g090950.2.1	Tomato	cytosol	45.07	27.96
PGSC0003DMT400066799	Potato	cytosol, nucleus, vacuole	44.86	27.86
AT2G45160.1	Thale cress	cytosol	37.32	27.81
KRH75351	Soybean	cytosol	42.56	27.28
CDY48367	Canola	cytosol	32.08	27.13
KRG88927	Soybean	cytosol	42.35	27.11
GSMUA_Achr3P29970_001	Banana	cytosol	29.14	26.18
AT3G60630.1	Thale cress	cytosol	34.17	26.16
KRH76167	Soybean	cytosol	40.25	26.05
KRH65380	Soybean	cytosol	39.2	25.55
GSMUA_Achr4P07190_001	Banana	plastid	26.62	24.33
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	26.21	23.41
GSMUA_Achr1P26740_001	Banana	cytosol	22.01	19.85

Protein Annotations

EnsemblPlants:GSMUA_Achr6P36740_001	EnsemblPlants:GSMUA_Achr6T36740_001	EnsemblPlantsGene:GSMUA_Achr6G36740_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF52	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI00029632C4
UniProt:M0TDB4	MapMan:15.5.12	:	:	:	:

Description

scarecrow transcription factor family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G36740_001]

Coordinates

chr6:-:34686605..34688413

Molecular Weight (calculated)

52857.6 Da

IEP (calculated)

8.503

GRAVY (calculated)

-0.035

Length

477 amino acids

Sequence
(BLAST)

001: MNKLLAQQQQ TQPPNCPSFF LPLHTSAGNR EDHQPQHFSS PLQKRPAVVD SFHGSRTPGL FLRGDQPQQL GFPQHLNASA FQLQPTPAKP KLADGNESDA
101: AAATMHQQHQ ALVDQLFKAA ELIEAGNIVS ARGILARLNH QLPFPVGKPL LRSVFYFKEA LHLVAAKSHR SPPPSSSAIS TPLDVVLKLG TYKTFSDVSP
201: IVQFTSFTCI QALLEALGSA TRIYIIDFDI GIGVQWSAFM QELAQRWSTA MAAVPYLKIT AFTSPSSHHP LELHLIHQNL CHFASSLSIP FEFDVLNLND
301: FEPSNFLRMC SALDAAVAVN LRVGSAACPP ISTLLRFVTQ LCPKIVVSVD HGCDRVDLPF AHHVLHAFQS CTVLLDSIDA AGTNQDVVSK IERYLVQPRI
401: ENAVLGRRWS SDKTLPWRTL YASAGFVPMR FSNFTETQAE CLLKRVLARG FHVEKRQTSL SLCWQRRELV SVSAWKC

Best Arabidopsis Sequence Match ( AT4G00150.1 )
(BLAST)

001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS

Arabidopsis Description

SCL6Scarecrow-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O81316]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.