Factsheet for GSMUA_Achr4P07190_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P03460_001	Banana	cytosol, plastid	64.94	63.48
GSMUA_Achr3P29970_001	Banana	cytosol	63.98	62.9
Bra028100.1-P	Field mustard	cytosol	31.23	33.2
CDY43895	Canola	cytosol	31.03	32.99
CDY13032	Canola	cytosol	31.03	32.86
KRH28630	Soybean	plastid	31.8	32.17
VIT_04s0023g01380.t01	Wine grape	plastid	33.14	32.16
KRH76844	Soybean	plastid	32.18	32.0
CDX72597	Canola	cytosol	28.16	31.89
CDX75590	Canola	cytosol	29.5	31.62
CDX69238	Canola	cytosol	29.5	31.49
KRH69945	Soybean	plastid	31.03	30.98
AT4G36710.1	Thale cress	cytosol	28.74	30.86
KRH08304	Soybean	plastid	31.03	30.0
PGSC0003DMT400033037	Potato	plastid	30.27	28.99
Solyc02g085600.1.1	Tomato	plastid	29.69	28.92
GSMUA_Achr6P36740_001	Banana	cytosol	24.33	26.62
GSMUA_Achr1P05940_001	Banana	plastid	26.05	25.76
GSMUA_Achr5P20860_001	Banana	cytosol	26.44	24.91
GSMUA_Achr11P...	Banana	cytosol	27.01	23.7
Bra011700.1-P	Field mustard	cytosol	29.31	22.11
GSMUA_Achr8P11160_001	Banana	cytosol	27.2	21.29
GSMUA_Achr11P...	Banana	cytosol	25.86	19.51
GSMUA_Achr1P26740_001	Banana	cytosol	19.73	19.47

Protein Annotations

EnsemblPlants:GSMUA_Achr4P07190_001	EnsemblPlants:GSMUA_Achr4T07190_001	EnsemblPlantsGene:GSMUA_Achr4G07190_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF53	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000296381C
UniProt:M0SLT6	MapMan:15.5.12	:	:	:	:

Description

Putative Scarecrow-like protein 15 [Source:GMGC_GENE;Acc:GSMUA_Achr4G07190_001]

Coordinates

chr4:-:5358776..5360344

Molecular Weight (calculated)

56249.6 Da

IEP (calculated)

6.568

GRAVY (calculated)

0.013

Length

522 amino acids

Sequence
(BLAST)

001: MKHSEARTDS PRTHRRFSVP SKPLLLDSSP DNLNTNSILF APNLFYEPTS VLDPRLTSRF VTAPSAAPAG VCEPPRLFRG GGNSHQHFPS SDQWYTASWL
101: LPETPDFSPL PDDVNPSFLN SHFDIPFDSF AAGDLVSSPS PGFDRSQLES LIRAAYYLES NDFDAARVIL SRLNQHIPST VVSPLQRAVS LFKEALLGLL
201: CPSTAEPPIP ALELVRHIDD HKVFSDLSPV PHFATFTATQ ILIETLDGGA RSIHLVDFDF GLGVQWSSFA QELAERSGAS LSSPPAVRIT AFIAEESAET
301: AFAAENLRDF ARNLKISLVV NFVRVGGLGK LALNDVVLSG AGEPTAVVLT PSAFRLFGSG DGAQVSTATL LRFVRRASPR VVVFVDTDGG ATSGVAVAHP
401: TLSLQRRVSE GVGHYAALLE SVAEAAAATG AGEGAVQQVA RAVVRPWVAA TVGEWPVRLG PWREILAGAG WVPLHLSEIA ESQAKWLVQR APVDGHHVAR
501: RNRALVLSWR GRELACTSAW RC

Best Arabidopsis Sequence Match ( AT4G36710.1 )
(BLAST)

001: MKIPASSPQD TTNNNNNTNS TDSNHLSMDE HVMRSMDWDS IMKELELDDD SAPNSLKTGF TTTTTDSTIL PLYAVDSNLP GFPDQIQPSD FESSSDVYPG
101: QNQTTGYGFN SLDSVDNGGF DFIEDLIRVV DCVESDELQL AQVVLSRLNQ RLRSPAGRPL QRAAFYFKEA LGSFLTGSNR NPIRLSSWSE IVQRIRAIKE
201: YSGISPIPLF SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EITEKSVSGG FLRVTAVVAE ECAVETRLVK ENLTQFAAEM KIRFQIEFVL
301: MKTFEMLSFK AIRFVEGERT VVLISPAIFR RLSGITDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP PGDLVKKIVE
401: AFVLRPKISA AVETAADRRH TGEMTWREAF CAAGMRPIQL SQFADFQAEC LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF

Arabidopsis Description

SCL15HAM4 [Source:UniProtKB/TrEMBL;Acc:A0A178UVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.